View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9926_low_20 (Length: 302)
Name: NF9926_low_20
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 31333113 - 31333390
Alignment:
| Q |
11 |
aagcagagaacaatgatgaaaagtcaaactataaaagaaatttaaaagtaaatgatcaaactttgaatccaattcattctagattatttagtcaaaataa |
110 |
Q |
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| T |
31333113 |
aagcaaagaacaatgatgaaaagtcaaactataaaagaaatttaaaagtaaatgatcaaactttgaatccaattcattctagattatttagtcaaaataa |
31333212 |
T |
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| Q |
111 |
gttgtgatccaaagaatgaagagccattccaacaagcaaagatttatttacatttacaaacacagccaaacatgatttatggccacagctgatttaatgg |
210 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31333213 |
gttgtgatccaaagaaagaagagccattccaacaagcaaagatttatttacatttacaaacacagccaaacatgatttatggacacagctgatttaatgg |
31333312 |
T |
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| Q |
211 |
aaaaattcaaaactatatatagaataaaatagaaatcatggtt----tatatatatacacacaatgaaagggtatgta |
284 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31333313 |
aaaaattcaaaactatatatagaagaaaatagaaatcatggtttatatatatatatacacacaatgaaagggtatgta |
31333390 |
T |
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