View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9926_low_23 (Length: 280)
Name: NF9926_low_23
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 35133083 - 35132822
Alignment:
| Q |
1 |
gaagaagaatggagtgcagatatgtctcagttgctcattggatctaaatttgcttctggtagacacagtagaatctatagaggtgtttacaagcaaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35133083 |
gaagaagaatggagtgcagatatgtctcagttgctcattggatctaaatttgcttctggtagacacagtagaatctatagaggtgtttacaagcaaaagg |
35132984 |
T |
|
| Q |
101 |
atgttgcaattaagcttgtgagtcagcctgaagaagatgaagatttggcttcttttcttgagaagcaatttacttctgaagttgctttgcttctgaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35132983 |
atgttgcaattaagcttgtgagtcagcctgaagaagatgaagatttggcttcttttcttgagaagcaatttacttctgaagttgctttgcttctgaggtt |
35132884 |
T |
|
| Q |
201 |
gcgtcatccaaatattcttactgtaagtccttgtgctttcttcaatcatccctctgttagtt |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35132883 |
gcgtcatccaaatattcttactgtaagtccttgtgctttcttcaatcatccctctgttagtt |
35132822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 191
Target Start/End: Complemental strand, 43933495 - 43933314
Alignment:
| Q |
10 |
tggagtgcagatatgtctcagttgctcattggatctaaatttgcttctggtagacacagtagaatctatagaggtgtttacaagcaaaaggatgttgcaa |
109 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||| | ||||||| |||||| ||||| || || ||||| |||||| | || ||| | | ||||||||| | |
|
|
| T |
43933495 |
tggaatgctgatatgtctcagttattcattggtgccaaatttgattctgggagacatagcaggatctacagaggtatctataagaacatggatgttgcta |
43933396 |
T |
|
| Q |
110 |
ttaagcttgtgagtcagcctgaagaagatgaagatttggcttcttttcttgagaagcaatttacttctgaagttgctttgct |
191 |
Q |
| |
|
|||||||||| ||||| || ||||| ||||| || |||||| |||| |||||||| || ||||||||||| ||||||||||| |
|
|
| T |
43933395 |
ttaagcttgttagtcaaccagaagaggatgaggaattggctgctttgcttgagaaacactttacttctgaggttgctttgct |
43933314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University