View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9926_low_25 (Length: 262)
Name: NF9926_low_25
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 27489876 - 27490113
Alignment:
| Q |
9 |
agcagagaatagaggtcctcttcttgaaatgcaccatgcttggagacacaaggctactgcggatcccataactccctacaaaatgtatttattcttaatt |
108 |
Q |
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| T |
27489876 |
agcagagaatagaggtcctcttcttgaaatgcaccatgcttggagacacaaggctactgcggatcccataactccctacaaaatgtatttattcttaatt |
27489975 |
T |
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| Q |
109 |
aggaaaatgatgatgtatcaatttatatatatagacaagtatttttatatcatcatggaagatcatccacatactgaatataaaatgcaaccaaattgaa |
208 |
Q |
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| T |
27489976 |
aggaaaatgatgatgtatcaatttatatatatagacaagtatttttatatcatcatggaagatcatccacatactgaatataaaatgcaaccaaattgaa |
27490075 |
T |
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| Q |
209 |
gtagagaagtaatcttccacgcatttagatctgcctcc |
246 |
Q |
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| T |
27490076 |
gtagagaagtaatcttccacgcatttagatctgcctcc |
27490113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 480859 - 480626
Alignment:
| Q |
9 |
agcagagaatagaggtcctcttcttgaaatgcaccatgcttggagacacaaggctactgcggatcccataactccctacaaaatgtatttattcttaatt |
108 |
Q |
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| T |
480859 |
agcagagaagagaggtcctctctttgaaatgcaccatgcttgaagatagaatgttactgcagatcccatgattccctacaaaatgtaattactgctaatt |
480760 |
T |
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| Q |
109 |
aggaaaatgatgatgtatcaatttat--atatatagacaagtatttttatatcatcatggaagatcatccacatactgaatataaaatgcaaccaaattg |
206 |
Q |
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| T |
480759 |
aggcac-tgatgatgtattaatttatttatatatatacaagtatagttgtatcataatgaaaattcatccacatactgcatataaaatgcaaccaaattg |
480661 |
T |
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| Q |
207 |
aagtagagaagtaatcttccacgcatttagatctg |
241 |
Q |
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| T |
480660 |
aagcaaagaattgatcttccaaacatttaggtctg |
480626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 468842 - 468757
Alignment:
| Q |
9 |
agcagagaatagaggtcctcttcttgaaatgcaccatgcttggagacacaaggctactgcggatcccataactccctacaaaatgt |
94 |
Q |
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| T |
468842 |
agcagagaagagaggtcctctccttgaaatgcaccatgcttggagacagtatattactgcagatcccataactccctgcaaaatgt |
468757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 475396 - 475171
Alignment:
| Q |
10 |
gcagagaatagaggtcctcttcttgaaatgcaccatgcttggagacacaaggctactgcggatcccataactccctacaaaatgtatttattctt----a |
105 |
Q |
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| T |
475396 |
gcagagaagagaggtcctctctttgtaatgcaccatgcttggagacaaaatacaaatgcagaccccataattccctgcaaaatgtatttatttattacaa |
475297 |
T |
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| Q |
106 |
attaggaaaatgatgatgtatcaatttatatatatagacaagtatttttatatcatcatggaagatcatccacatactgaatataaaatgcaaccaaatt |
205 |
Q |
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| T |
475296 |
attaggccactcaatgtgtattaattaata-atatatacaagtattgttgtatcatcatggaaaat-atgggcatactgcatataaagcgcaaccaaatt |
475199 |
T |
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| Q |
206 |
gaagtagagaagtaatcttccacgcatt |
233 |
Q |
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||||||||||| |||| ||||| ||||| |
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| T |
475198 |
gaagtagagaattaattttccatgcatt |
475171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 457731 - 457640
Alignment:
| Q |
10 |
gcagagaatagaggtcctcttcttgaaatgcaccatgcttggagacacaaggctactgcggatcccataactccctacaaaatgtatttatt |
101 |
Q |
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| T |
457731 |
gcagagaagagaggtcctctctttgtaatgcaccatgcttggagacaaaatacaaatgcagaccccataattccctgcaaaatgtatttatt |
457640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 449310 - 449231
Alignment:
| Q |
154 |
tatatcatcatggaagatcatccacatactgaatataaaatgcaaccaaattgaagtagagaagtaatcttccacgcatt |
233 |
Q |
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| T |
449310 |
tatatcatcatgaaaattcatccacatactgcatataaagtgcaaccgagttgaactagagatttaatcttccatgcatt |
449231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 449439 - 449348
Alignment:
| Q |
10 |
gcagagaatagaggtcctcttcttgaaatgcaccatgcttggagacacaaggctactgcggatcccataactccctacaaaatgtatttatt |
101 |
Q |
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|||||||| ||||||||||| || ||||||||||||||||||||| || ||||| |||||||||| ||||| ||||| |||||||| |
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| T |
449439 |
gcagagaagagaggtcctctctttttaatgcaccatgcttggagacaaaataaaactgctgatcccataattccctgaaaaatatatttatt |
449348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 457556 - 457489
Alignment:
| Q |
179 |
atactgaatataaaatgcaaccaaattgaagtagagaagtaatcttccacgcatttagatctgcctcc |
246 |
Q |
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| T |
457556 |
atactgcatataaagtgcacccaaattgaagtagagaattaattttccatgcattcaggtctggctcc |
457489 |
T |
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