View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9926_low_28 (Length: 247)
Name: NF9926_low_28
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 30800501 - 30800366
Alignment:
| Q |
97 |
aggtgtgagggggcataatagaaataaggagaaaaagttagtataagaataagagaagtcagagttagaaaatcatattaagtgaaaactgtttttggga |
196 |
Q |
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| T |
30800501 |
aggtgtgagggggcagaataggaataaggagaaaaagttagtataagaataagagaagtgagagttagaaaatcatattacgtgaaaactgcttttggaa |
30800402 |
T |
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| Q |
197 |
aaacggggtgttgcaattgatatccagagttgtttg |
232 |
Q |
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| T |
30800401 |
aaacggggtgttacaattgatatccagagttgtttg |
30800366 |
T |
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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 30800062 - 30799973
Alignment:
| Q |
119 |
aataaggagaaaaagttagtataagaataagagaagtcagagttagaaaatcatattaagtgaaaactgtttttgggaaaacggggtgtt |
208 |
Q |
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| T |
30800062 |
aataaggagaaaaagttagtataagaataagagaagtcagagttagaaaatcatattacgtgaaaactacttttggaaaaatgtggtgtt |
30799973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 12037013 - 12037090
Alignment:
| Q |
97 |
aggtgtgagggggcataatagaaataaggagaaaaagttagtataagaataagagaagtcagagttagaaaatcatatta |
176 |
Q |
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| T |
12037013 |
aggtgtgagggg-cagaataggaataagaagaaaa-gttagtataagaataagagaagtcagagttagaaaatcatatta |
12037090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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