View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9926_low_30 (Length: 237)
Name: NF9926_low_30
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31328301 - 31328522
Alignment:
| Q |
1 |
cttacctgaattagatttttgcataggatacaaatttatgttagaccatgatgatgattttgttgttgctgatgatgtttgcttgtttgaactcannnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31328301 |
cttacctgaattagatttttgcataggatacaaatttatgttagaccatgatgatgattttgttgttgctgatgatgtttgcttgtttgaactcattttt |
31328400 |
T |
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| Q |
101 |
nncgccgaaccagttgagttacttctatacaaaggaggtaaagaaaaactcaaattcttctttgtatcacaattgagacttttgcttctactaaatcccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31328401 |
ttcgccgaaccagttgagttacttctatacaaaggaggtaaagaaaaactcaaattcttctttgtatcacaattgagacttttgcttctactaaatcccc |
31328500 |
T |
|
| Q |
201 |
aaaaagacttggaatgatgttt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
31328501 |
aaaaagacttggaatgatgttt |
31328522 |
T |
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