View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9926_low_6 (Length: 431)
Name: NF9926_low_6
Description: NF9926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9926_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 9 - 416
Target Start/End: Original strand, 41297053 - 41297460
Alignment:
| Q |
9 |
agcacagaggaattttcatgcattccttacataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41297053 |
agcacagaggaattttcatgcattccttacataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaa |
41297152 |
T |
|
| Q |
109 |
attttcctcttgtaaccgttaatggagttggaattgctcttgagttatcctatgttctcatttatttctggtattcttcgcccaaaggaaaggtaattag |
208 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41297153 |
attttcctcttgtcacagttaatggagttggaattgctcttgagttatcttatgttctcatttatttctggtattcttcgcccaaaggaaaggtaattag |
41297252 |
T |
|
| Q |
209 |
ttaacttacatgccagcttttcattagtttaaaatcttttgcaaccaaaacaaattaagtgtatgtttggtatcacgttggtatgttaaaatcgggacaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41297253 |
ttaacttacatgccagcttttcattagtttaaaatcttttgcaaccaaaacaaattaagtgtatgtttggtatcacgttggtatgttaaaatcgggacaa |
41297352 |
T |
|
| Q |
309 |
cccatcatgattttccaaaccacactctataacttttgacaaatcacgataggtcgtcgtgattctggcacaactacataataccaaacatatgttaagc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41297353 |
cccatcatgattttccaaaccacactctataacttttgacaaatcacgataggtcgtcgtgattctggcacaactacataataccaaacatatgttaagc |
41297452 |
T |
|
| Q |
409 |
accatcat |
416 |
Q |
| |
|
|||||||| |
|
|
| T |
41297453 |
accatcat |
41297460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 41306915 - 41307118
Alignment:
| Q |
9 |
agcacagaggaattttcatgcattccttacataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaa |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41306915 |
agcaccgaggaattttcatgcattccttacataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaa |
41307014 |
T |
|
| Q |
109 |
attttcctcttgtaaccgttaatggagttggaattgctcttgagttatcctatgttctcatttatttctggtattcttcgcccaaaggaaaggtaattag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||||||| |
|
|
| T |
41307015 |
attttcctcttgtaaccgttaatggagttggaattgctcttgagttatcctatgttcttatatacttctggtattcttcgcctaaaggaaaggtaattaa |
41307114 |
T |
|
| Q |
209 |
ttaa |
212 |
Q |
| |
|
|||| |
|
|
| T |
41307115 |
ttaa |
41307118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 9612239 - 9612044
Alignment:
| Q |
9 |
agcacagaggaattttcatgcattccttacataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaa |
108 |
Q |
| |
|
||||| |||||||||||||| |||||||||| || ||| | ||||| ||||| |||||||| |||||||| || ||||||||||| |||| ||||||| |
|
|
| T |
9612239 |
agcactgaggaattttcatgtattccttacactataggactattgaactgtctccttttcacttggtatggattgcctattgtaagtaacaagtgggaaa |
9612140 |
T |
|
| Q |
109 |
attttcctcttgtaaccgttaatggagttggaattgctcttgagttatcctatgttctcatttatttctggtattcttcgcccaaaggaaaggtaa |
204 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||| | | ||| || | ||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
9612139 |
attttcctcttgtcactgttaatggagttggaattgttttggagctagcttatgttctcatttatttttggtattcttcatccaaaggaaaggtaa |
9612044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University