View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9927_2 (Length: 404)
Name: NF9927_2
Description: NF9927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9927_2 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 30737232 - 30737616
Alignment:
| Q |
1 |
cccacaacggcaagtgcatccattcagtccaaggaatggcatcaagtagaaacaatggctaagaaatctgagtcatgtaatcgatcctctgatggaacaa |
100 |
Q |
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| T |
30737232 |
cccacaacggcaggtgcatcaattcagtccaaggaatggcatcaagtagaaacaatggctaagaaatctgagtcatgtaatcgatcctctgatggaacaa |
30737331 |
T |
|
| Q |
101 |
ttgttcctctaattcaataatgaagggaagatcaaggttcctctaccccatcattggtttaattcagtaaaaaccaagtcgagcatttgtagaaaaatgc |
200 |
Q |
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| T |
30737332 |
ttgttcctctaattcaataatgaagggaagatcaaggttcctctaccccatcattggtttaattcaggaaaaaccaagtcgagcatttgtagaaaaatgc |
30737431 |
T |
|
| Q |
201 |
ctggtctcgaatgttttaaatacatccgagccaacttacatctctcgatgtaaacactatgcaatgaattcatcattgaagcaaggacacaaaatctatt |
300 |
Q |
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| T |
30737432 |
ctggtctcgaatgttttaaatacatccgagccaacttac--------atgtaaacactatggaatgaattcatccttgaagcaaggacacgaaatctatt |
30737523 |
T |
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| Q |
301 |
ggaagcctccaatacaaaagaagcatcatagatgttttatatacat-catgttaaattatgccttgacccaagcataataagtcatgtctgtg |
392 |
Q |
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| T |
30737524 |
ggaagcctccaatacaaaagaagtatcatagatgttttatatacatccatgttaacttatgccttgactcaagcataataagtcatgtctgtg |
30737616 |
T |
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