View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9928_low_10 (Length: 222)
Name: NF9928_low_10
Description: NF9928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9928_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 39300593 - 39300437
Alignment:
| Q |
1 |
tttcttattccacatgtcatactccatgcaaaacatatcccccacaaacctcttcaaaccgccaatacctttctccttttaaatcacacaacatttccat |
100 |
Q |
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| T |
39300593 |
tttcttattccacatgtcatactccatgcaaaacatatccaccacaaacctcttcaaaccgccaatacctttctccttttaaatcacacaacatttccat |
39300494 |
T |
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| Q |
101 |
gcacacatacaaaaaacatcacaagtacttcaacaaagttcaagcatcttaaactac |
157 |
Q |
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| T |
39300493 |
gcacacatacaaaaaacatcacaagtacttcaacaaagttcaagcatcttaaactac |
39300437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 39300422 - 39300388
Alignment:
| Q |
173 |
caatcaaaagcaaaaccgtacgtaacacccttttg |
207 |
Q |
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| T |
39300422 |
caatcaaaagcaaaaccgtacgtaacacccttttg |
39300388 |
T |
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