View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9928_low_12 (Length: 211)
Name: NF9928_low_12
Description: NF9928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9928_low_12 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 51807990 - 51808174
Alignment:
| Q |
10 |
agaagcagagaggctatcaaaagtttcgcagtgttatctatccaccacatctggtcctctagctggtctgctcttcatctccaatgaaaaggttgccttc |
109 |
Q |
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| T |
51807990 |
agaaggagagaggctatcaaaagtttcacagtgttatctatccaccacatctggtcctctagctggtctgctcttcatctccaatgaaaaggttgccttc |
51808089 |
T |
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| Q |
110 |
tgcagtgagagatcaataaaagtcttcaatcagaaaggtcaaatgcgtaggatccgatataaggtatgtcctgaactaaataagt |
194 |
Q |
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| T |
51808090 |
tgcagtgagagatcaataaaagtcttcaatcagaaaggtcaaatgcgtaggatccgatataaggtatgtcctgaactaaataagt |
51808174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 51804036 - 51804219
Alignment:
| Q |
9 |
gagaagcagagaggctatcaaaagtttcgcagtgttatctatccaccacatctggtcctctagctggtctgctcttcatctccaatgaaaaggttgcctt |
108 |
Q |
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| T |
51804036 |
gagaaggagagaggctatcaaaagtttcgcagtgttatctttccaccacatccggtcctctatctggtctcctcttcatctccaatgaaaaggtggcctt |
51804135 |
T |
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| Q |
109 |
ctgcagtgagagatcaataaaagtcttcaatcagaaaggtcaaatgcgtaggatccgatataaggtatgtcctgaactaaataa |
192 |
Q |
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| T |
51804136 |
ctgcagtgagagaacaataaaagtcttcaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcgtgaactatataa |
51804219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 33 - 180
Target Start/End: Original strand, 51772438 - 51772585
Alignment:
| Q |
33 |
tttcgcagtgttatctatccaccacatctggtcctctagctggtctgctcttcatctccaatgaaaaggttgccttctgcagtgagagatcaataaaagt |
132 |
Q |
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| T |
51772438 |
tttcgcagtgttatctatccaccacatctggccctctagccggtctcctcttcatctccaatgagaaggttgccttttgcagtgacagatcaataaaagt |
51772537 |
T |
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| Q |
133 |
cttcaatcagaaaggtcaaatgcgtaggatccgatataaggtatgtcc |
180 |
Q |
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| T |
51772538 |
ctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcc |
51772585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 51780290 - 51780453
Alignment:
| Q |
29 |
aaagtttcgcagtgttatctatccaccacatctggtcctctagctggtctgctcttcatctccaatgaaaaggttgccttctgcagtgagagatcaataa |
128 |
Q |
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| T |
51780290 |
aaagtttctcactgttatctttccaccacatctggccctctagctggcctcctcttcatctccaatgaaaaggttgccttttgcagtgacagatcaataa |
51780389 |
T |
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| Q |
129 |
aagtcttcaatcagaaaggtcaaatgcgtaggatccgatataaggtatgtcctgaactaaataa |
192 |
Q |
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| T |
51780390 |
aagtctataatcagaaaggtcaaatgtgtaggatccgctataaggtaagccgtgaactatataa |
51780453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 51761489 - 51761538
Alignment:
| Q |
88 |
ctccaatgaaaaggttgccttctgcagtgagagatcaataaaagtcttca |
137 |
Q |
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| T |
51761489 |
ctccactgaaaaggttgccttctgcagtgagagatccatgaaactcttca |
51761538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 12196246 - 12196136
Alignment:
| Q |
16 |
agagaggctatcaaaagtttcgcagtgttatctatccaccacatctggtcctctagctggtctgctcttcatctccaatgaaaaggttgccttctgcagt |
115 |
Q |
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| T |
12196246 |
agagaggctactaaaagcatctcaatgttatctatcaacaacatctggtcctctagcaggcctactcttcatatcaactaataaaattgccttttgtagt |
12196147 |
T |
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| Q |
116 |
gagagatcaat |
126 |
Q |
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| T |
12196146 |
gagagatcaat |
12196136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 6932 - 7097
Alignment:
| Q |
29 |
aaagtttcgcagtgttatctatccaccacatctggtcct--ctagctggtctgctcttcatctccaatgaaaaggttgccttctgcagtgagagatcaat |
126 |
Q |
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| T |
6932 |
aaagtttctcactgttatctttccaccacatctggcccctcctagctggcctcctcttcatctccaatgaaaaggttgccttttgcagtgacagatcaat |
7031 |
T |
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| Q |
127 |
aaaagtcttcaatcagaaaggtcaaatgcgtaggatccgatataaggtatgtcctgaactaaataa |
192 |
Q |
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| T |
7032 |
aaaagtctataatcagaaaggtcaaatgtgtaggatccgctataaggtaagccgtgaactatataa |
7097 |
T |
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