View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9928_low_2 (Length: 385)
Name: NF9928_low_2
Description: NF9928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9928_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 322
Target Start/End: Original strand, 42947225 - 42947531
Alignment:
| Q |
15 |
ctattcaataaatgtcaacacacacaaaaacaataagcatgaggggggaggttaagaaattatgaatatgggttgaagattgttaggttaaattttgcat |
114 |
Q |
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| T |
42947225 |
ctattcaataaatctcaacacacacaaaaacaatgagcatgaggggggaggttaagaaattatgaatatgggttgaagattgttaggttaaattttgcat |
42947324 |
T |
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| Q |
115 |
tgaggnnnnnnnctcatattccacttagaataaatgtaatgtctgaaatgagtttataaaagccacatacctcatcatacaagccgctaaatataaaatt |
214 |
Q |
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| T |
42947325 |
cgaggaaaaaaactcaaattccacttagaataaatgtaatgtctgaaatgagtttataaaggccacatacatcatcatacaagccg-taaatataaaatt |
42947423 |
T |
|
| Q |
215 |
taaacactaatcttatttaacatgtgtcacacactaaatgtaaatacttctaacttcttttaatggagattcgaattttatttcatcttaatgcggaagc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42947424 |
taaacactaatcttatttaacatgtgtcacacactaaatgtaaatacttctaatttcttttaatggaaattcgaattttatttcatcttaatgcggaagc |
42947523 |
T |
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| Q |
315 |
ataaattg |
322 |
Q |
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|||||||| |
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| T |
42947524 |
ataaattg |
42947531 |
T |
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