View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9928_low_5 (Length: 242)
Name: NF9928_low_5
Description: NF9928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9928_low_5 |
 | |
|
| [»] scaffold0147 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0147 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 10696 - 10934
Alignment:
| Q |
4 |
tcgcttgcttacagaacctggtcatggagttgttctcaaaatgacaagagtttaaacaacaatgtaattaaaatacttctcccgttgttcattaggtttc |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10696 |
tcgcttgcttacagaacctggtcatggagttgttctcaaaatgacaagagtttaagcaacaatgtaattaaaatacttctcccgttgttcgttaggtttc |
10795 |
T |
|
| Q |
104 |
ctttttcattttccttgtgaaggttactattatagtaataattaataagacaaacaattctctttcaaatcaatgatgagaacaacatgtgcaatgttat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10796 |
ctttttcattttccttgtgaaggttactattatagtaataattaataagacaaacagttctctttcaaatcaatgatgagaacaacatgtgcaatgttat |
10895 |
T |
|
| Q |
204 |
tacctaggacttttgaaccatttgcatttctcctttgct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10896 |
cacctaggacttttgaaccatttgcatttctcttttgct |
10934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 19208448 - 19208549
Alignment:
| Q |
16 |
agaacctggtcatggagttgttctcaaaatgacaagagttta----aacaacaatgtaattaaaatacttctcccgttgttcattaggtttcctttttca |
111 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||| | ||||||| ||| |||||| || |||| ||||||||| || ||||||||||| |
|
|
| T |
19208448 |
agaacctggtcatggagttgttctcaatatgacaagaatttagttgagcaacaatttaactaaaatgattttccccttgttcattggggttcctttttca |
19208547 |
T |
|
| Q |
112 |
tt |
113 |
Q |
| |
|
|| |
|
|
| T |
19208548 |
tt |
19208549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University