View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9928_low_9 (Length: 229)
Name: NF9928_low_9
Description: NF9928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9928_low_9 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 10254 - 10480
Alignment:
| Q |
5 |
catattcatcatgtcattttagatattcttatgcat--agtaaatcttctataaaattgttgcgtttgcagttaaccatggtgattcaagagactttgag |
102 |
Q |
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| T |
10254 |
catattcatcatgtcattttagatattcttatgcattaagtaaatcttctataaaattgttgcgtttgcagttaaccatggtgattcaagagactttgag |
10353 |
T |
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| Q |
103 |
gctttatccgccagcagtatttctcaccagagcagctttccaagatattaacataaaaggtatcaaagttccaaaaggaatgaatattcagattccaatc |
202 |
Q |
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| T |
10354 |
gctttatccgccagcagtatttctcaccagaacagctttccaagatattaacataaaaggtatcaaagttccaaaaggaatgaatattcagattccaatc |
10453 |
T |
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| Q |
203 |
ccaatattgcagcatgaaattgatatt |
229 |
Q |
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| T |
10454 |
ccaatattgcagcatgacattgatatt |
10480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 67 - 228
Target Start/End: Original strand, 19208058 - 19208219
Alignment:
| Q |
67 |
tttgcagttaaccatggtgattcaagagactttgaggctttatccgccagcagtatttctcaccagagcagctttccaagatattaacataaaaggtatc |
166 |
Q |
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| T |
19208058 |
tttgcagttaaccatggtgattcaagagactttgaggctttatccaccagcagtatttatcaccagaacatcattccaagatattaatttaaaaggtatc |
19208157 |
T |
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| Q |
167 |
aaagttccaaaaggaatgaatattcagattccaatcccaatattgcagcatgaaattgatat |
228 |
Q |
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| T |
19208158 |
aaagttccaaaaggaattaatatgcagattccaattgcgatattgcaacaagacattgatat |
19208219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 213
Target Start/End: Original strand, 1763063 - 1763207
Alignment:
| Q |
69 |
tgcagttaaccatggtgattcaagagactttgaggctttatccgccagcagtatttctcaccagagcagctttccaagatattaacataaaaggtatcaa |
168 |
Q |
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| T |
1763063 |
tgcagttaacaatggtgattcaagagacattgaggctttatccaccagcattatcggttgttagacaggcttttgaagacattaatttcaaaggtatcca |
1763162 |
T |
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| Q |
169 |
agttccaaaaggaatgaatattcagattccaatcccaatattgca |
213 |
Q |
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| T |
1763163 |
aattccaaaaggaatgaatcttcaaattccaatgccaatattgca |
1763207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 210
Target Start/End: Original strand, 25197525 - 25197668
Alignment:
| Q |
67 |
tttgcagttaaccatggtgattcaagagactttgaggctttatccgccagcagtatttctcaccagagcagctttccaagatattaacataaaaggtatc |
166 |
Q |
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| T |
25197525 |
tttgcagttaacaatggtgattcaagagactttaaggctttattcacctgtattgtttgccgcaagaacaacattaaaagattatgatttaaaaggtatc |
25197624 |
T |
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| Q |
167 |
aaagttccaaaaggaatgaatattcagattccaatcccaatatt |
210 |
Q |
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| T |
25197625 |
aaaattccaaaaggaatcactattcagattccaatcccgatatt |
25197668 |
T |
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