View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9929_1 (Length: 1379)

Name: NF9929_1
Description: NF9929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9929_1
NF9929_1
[»] chr8 (2 HSPs)
chr8 (987-1160)||(12933811-12933984)
chr8 (1010-1047)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (987-1160)||(28608621-28608794)
chr4 (987-1137)||(14177081-14177231)
chr4 (995-1048)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (980-1017)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (980-1017)||(796698-796735)
chr6 (980-1017)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (980-1017)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 987 - 1160
Target Start/End: Original strand, 12933811 - 12933984
Alignment:
Q  987 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 1085  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 12933909  T
Q  1086 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga 1160  Q
    |||||||||| |||||  | |||||||| || || |||||||| || ||||| | ||| ||||| || |||||||    
T  12933910 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga 12933984  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1010 - 1047
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  1010 catggagatttggaagaggagatttatatggagcaacc 1047  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 987 - 1160
Target Start/End: Complemental strand, 28608794 - 28608621
Alignment:
Q  987 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 1085  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  ||||||||||||||| ||| || || ||||| | ||| |||| |    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt 28608696  T
Q  1086 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga 1160  Q
    |||||||||| |||||  | |||||||| || || |||||||| || ||||| | ||| ||||| || |||||||    
T  28608695 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga 28608621  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 987 - 1137
Target Start/End: Original strand, 14177081 - 14177231
Alignment:
Q  987 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 1085  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 14177179  T
Q  1086 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggta 1137  Q
    |||||||||| |||||  | |||||||| || || |||||||| || |||||    
T  14177180 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggta 14177231  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 995 - 1048
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  995 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 1048  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 980 - 1017
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  980 gagcagttggatgtgaaaactgcatttcttcatggaga 1017  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 980 - 1017
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  980 gagcagttggatgtgaaaactgcatttcttcatggaga 1017  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 980 - 1017
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  980 gagcagttggatgtgaaaactgcatttcttcatggaga 1017  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 980 - 1017
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  980 gagcagttggatgtgaaaactgcatttcttcatggaga 1017  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

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