View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9930_high_12 (Length: 295)
Name: NF9930_high_12
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9930_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 10992726 - 10992465
Alignment:
| Q |
13 |
agcacagaaaccgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaattt |
112 |
Q |
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| T |
10992726 |
agcacagaaaccgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaattt |
10992627 |
T |
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| Q |
113 |
agtatcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattc |
212 |
Q |
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| T |
10992626 |
agtatcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattc |
10992527 |
T |
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| Q |
213 |
tcttaatttctacataagagtatctcgtgggtttaagagctctataatcttctaaaaacttt |
274 |
Q |
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| T |
10992526 |
tcttaatttctacataagagtatctcgtgggtttaagagctctataatcttctaaaaacttt |
10992465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 10930522 - 10930261
Alignment:
| Q |
13 |
agcacagaaaccgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaattt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
10930522 |
agcacagaaaccgaccaatctaacaatattaacatgatggattctacccattgtaccaacttcattgaggaaatcttgcccgtttccttgtgaaacattt |
10930423 |
T |
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| Q |
113 |
agtatcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattc |
212 |
Q |
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| T |
10930422 |
agtatcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcgccaaaattatttgtgattc |
10930323 |
T |
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| Q |
213 |
tcttaatttctacataagagtatctcgtgggtttaagagctctataatcttctaaaaacttt |
274 |
Q |
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| T |
10930322 |
ttttaatttcttcatatgagtatcttgtgggcttaagagctctataatcttctaaaaacttt |
10930261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 11026182 - 11025921
Alignment:
| Q |
13 |
agcacagaaaccgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaattt |
112 |
Q |
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|||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||| ||||| ||||| || ||||| ||||||| |||| |
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| T |
11026182 |
agcacagaaaccgaccaatcggacaatattaacatggtggattctactcattgtaccaacttcatttaggaagtcttggccatttccctgagaaacattt |
11026083 |
T |
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| Q |
113 |
agtatcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattc |
212 |
Q |
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|||||||||||||||||| | | ||||||||||||||||||| |||| |||||||||||||| |||||||||||| | || | || ||||||||||||| |
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| T |
11026082 |
agtatcttcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcctaacatatccccgaaattatttgtgattc |
11025983 |
T |
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| Q |
213 |
tcttaatttctacataagagtatctcgtgggtttaagagctctataatcttctaaaaacttt |
274 |
Q |
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|||| |||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||| |
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| T |
11025982 |
tcttgatttctacataagagtatctggtgggcttaagaactctatagtcttctaaaaacttt |
11025921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 11040878 - 11040624
Alignment:
| Q |
20 |
aaaccgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaatttagtatct |
119 |
Q |
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||||||| ||| | ||||||||||||||| || ||||||| |||||||| |||||||| ||||| ||||| || ||||| ||||||| ||||||||||| |
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| T |
11040878 |
aaaccgatcaaacgaacaatattaacatggtgtattctacccattgtacccacttcatttaggaagtcttggccatttccctgagaaacatttagtatct |
11040779 |
T |
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| Q |
120 |
tcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattctcttaat |
219 |
Q |
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||||||||||| | | ||||||||||||||||||| |||| |||||||||||||| |||||||||||| | || | || |||||||||||||||||||| |
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| T |
11040778 |
tcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcctaacatatccccgaaattatttgtgattctcttaat |
11040679 |
T |
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| Q |
220 |
ttctacataagagtatctcgtgggtttaagagctctataatcttctaaaaacttt |
274 |
Q |
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|||||||||||||||||| || || |||||||||||||| ||||||||||||||| |
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| T |
11040678 |
ttctacataagagtatctggttggcttaagagctctatagtcttctaaaaacttt |
11040624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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