View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9930_high_15 (Length: 284)

Name: NF9930_high_15
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9930_high_15
NF9930_high_15
[»] chr2 (2 HSPs)
chr2 (18-270)||(7119840-7120094)
chr2 (59-115)||(35581411-35581467)
[»] chr5 (2 HSPs)
chr5 (19-270)||(43391011-43391282)
chr5 (135-270)||(9178893-9179028)
[»] chr7 (6 HSPs)
chr7 (18-269)||(47432089-47432327)
chr7 (133-270)||(4097715-4097852)
chr7 (61-133)||(8178034-8178106)
chr7 (140-268)||(19596218-19596349)
chr7 (140-269)||(19751050-19751181)
chr7 (61-109)||(10486495-10486543)
[»] chr8 (3 HSPs)
chr8 (135-270)||(2704058-2704193)
chr8 (139-248)||(35653171-35653280)
chr8 (61-118)||(22642813-22642870)
[»] chr1 (4 HSPs)
chr1 (59-131)||(4816748-4816820)
chr1 (61-118)||(5299488-5299545)
chr1 (61-118)||(46496843-46496900)
chr1 (135-179)||(19023364-19023408)
[»] chr4 (1 HSPs)
chr4 (61-118)||(29542257-29542314)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 7119840 - 7120094
Alignment:
Q  18 aaaaggtaacttatattctttcattcaacatgatagaactaata--agatggaatcaaatcaaaaacatggtgactatcatacaattttgactcccttgc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7119840 aaaaggtaacttatattctttcattcaacatgatagaactaatacaagatggaatcaaatcaaaaatatggtgactatcatacaattttgactcccttgc 7119939  T
Q  116 taatgtattggcgacaaataaaacttatcttaaagtttagaaattgttgtaatagcgatctacaagtagacataatattgccataatctgattagttgtt 215  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7119940 taatgtattggcgacaaataaaacttatcttaaagtttggaaattgttgtaatagcgatctacaagtagacataatattgccaaaatctgattagttgtt 7120039  T
Q  216 agatttatccatgataccttccatcactagctttccatctagctcaatttgcacc 270  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||||||||||||    
T  7120040 agatttatccatcataccttccaccactagctttccttctagctcaatttgcacc 7120094  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 35581411 - 35581467
Alignment:
Q  59 ataagatggaatcaaatcaaaaacatggtgactatcatacaattttgactcccttgc 115  Q
    |||||||||||||||||||||||  | |||||||  ||||||| ||||| |||||||    
T  35581411 ataagatggaatcaaatcaaaaatttagtgactaggatacaatcttgacacccttgc 35581467  T

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Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 43391011 - 43391282
Alignment:
Q  19 aaaggtaacttatattctttcattcaacatg--atagaactaata-agatggaatcaaatcaaaaacatggtgactatcatacaattttgactcccttgc 115  Q
    |||||||||||||||| |||||||||||||   |||||||||||| | |||||||||||||||||||||| |||||| |||||| ||||||| |||||||    
T  43391011 aaaggtaacttatattatttcattcaacatataatagaactaatacaaatggaatcaaatcaaaaacatgatgactagcatacagttttgacacccttgc 43391110  T
Q  116 taatgtattggcgaca-----------------aataaaacttatcttaaagtttagaaattgttgtaatagcgatctacaagtagacataatattgcca 198  Q
    ||| |||| |||||||                 ||||||||||||| ||||||||| ||||| | ||||||| |||||||||||||||||||||||||||    
T  43391111 taaagtatgggcgacataatttgcttgtctccgaataaaacttatcataaagtttaaaaattatagtaatagtgatctacaagtagacataatattgcca 43391210  T
Q  199 taatctgattagttgttagatttatccatgataccttccatcactagctttccatctagctcaatttgcacc 270  Q
     ||||||||| |||||||||||||||||| ||  |||||| |||||||||   ||| |||||||||| ||||    
T  43391211 aaatctgattggttgttagatttatccataatgtcttccaccactagcttgtaatccagctcaatttacacc 43391282  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 270
Target Start/End: Original strand, 9178893 - 9179028
Alignment:
Q  135 aaaacttatcttaaagtttagaaattgttgtaatagcgatctacaagtagacataatattgccataatctgattagttgttagatttatccatgatacct 234  Q
    ||||||||| |||||||||| ||||| |||||| || ||||||||| ||  ||  ||||||||| | ||  |||  ||||||| | ||||||||||  ||    
T  9178893 aaaacttattttaaagtttaaaaattattgtaaaagtgatctacaattaaccaacatattgccaaactcatattgattgttagttgtatccatgatgtct 9178992  T
Q  235 tccatcactagctttccatctagctcaatttgcacc 270  Q
    |||| ||| ||||| | |||||||||||||| ||||    
T  9178993 tccaccaccagcttacaatctagctcaatttacacc 9179028  T

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Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 47432089 - 47432327
Alignment:
Q  18 aaaaggtaacttatattctttcattcaacatgatagaactaata--agatggaatcaaatcaaaaacatggtgactatcatacaattttgactcccttgc 115  Q
    |||||||||||||| ||  |||||||||||| ||||||||||||  ||||||||| |||| ||||| |||||||||| ||||||||||| ||||| |||     
T  47432089 aaaaggtaacttatttttcttcattcaacataatagaactaatacaagatggaattaaataaaaaatatggtgactagcatacaattttaactcc-ttgt 47432187  T
Q  116 taatgtattggcgacaaataaaacttatcttaaagtttagaaattgttgtaatagcgatctacaagtagacataatattgccataatctgattagttgtt 215  Q
    ||| |||| ||| |||              |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| ||||||    
T  47432188 taaagtataggcaaca--------------taaagtttggaaattgttgtaatagcaatctacaagtagacataatattgccaaaatttgattggttgtt 47432273  T
Q  216 agatttatccatgataccttccatcactagctttccatctagctcaatttgcac 269  Q
    |||||||||||||||  |||||| ||||||||| | ||||||| | ||||||||    
T  47432274 agatttatccatgatgtcttccaccactagcttgcaatctagcactatttgcac 47432327  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 270
Target Start/End: Complemental strand, 4097852 - 4097715
Alignment:
Q  133 ataaaacttatcttaaagtttagaaattgttgtaatagcgatctacaagtagacataatattgccataatctgattagttgttagatttatccatgatac 232  Q
    ||||||||||||||||||||| | |||||||||||||| |  |||||| ||||||||||||||||| |||  ||||  ||||||||||||| ||||||      
T  4097852 ataaaacttatcttaaagtttgggaattgttgtaatagtggcctacaattagacataatattgccaaaattcgattgattgttagatttattcatgatgt 4097753  T
Q  233 cttccatcactagctttccatctagctcaatttgcacc 270  Q
    | |||| ||||| ||| | ||||||||| |||||||||    
T  4097752 catccaccactaacttgcaatctagctctatttgcacc 4097715  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 8178034 - 8178106
Alignment:
Q  61 aagatggaatcaaatcaaaaacatggtgactatcatacaattttgactcccttgctaatgtattggcgacaaa 133  Q
    ||||||||||| |||||||||| ||| ||||| ||||||||||||||||||| |||||||||| ||| |||||    
T  8178034 aagatggaatccaatcaaaaacgtggcgactagcatacaattttgactccctagctaatgtatgggcaacaaa 8178106  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 140 - 268
Target Start/End: Complemental strand, 19596349 - 19596218
Alignment:
Q  140 ttatcttaaagtttagaaattgttgtaatagc---gatctacaagtagacataatattgccataatctgattagttgttagatttatccatgataccttc 236  Q
    ||||||||||||||||||| |||||||||| |   ||||||||| ||| || |||||||||| | ||  ||| |||||| ||| ||||||||||  ||||    
T  19596349 ttatcttaaagtttagaaaatgttgtaataacagtgatctacaattagccaaaatattgccaaactcatatttgttgtttgatgtatccatgatggcttc 19596250  T
Q  237 catcactagctttccatctagctcaatttgca 268  Q
    || |||||||||   |||| ||||||||||||    
T  19596249 caccactagcttctaatctggctcaatttgca 19596218  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 269
Target Start/End: Original strand, 19751050 - 19751181
Alignment:
Q  140 ttatcttaaagtttagaaattgttgtaatagc---gatctacaagtagacataatattgccataatctgattagttgttagatttatccatgataccttc 236  Q
    |||||||||| |||||||| |||||||||| |   |||||| || ||| || |||||||||| | ||  ||| |||||| ||| ||||||||||| ||||    
T  19751050 ttatcttaaaatttagaaaatgttgtaataacaatgatctataattagccaaaatattgccaaactcgtatttgttgtttgatgtatccatgata-cttc 19751148  T
Q  237 catcactagctttccatctagctcaatttgcac 269  Q
    || |||||||||   |||  |||||||||||||    
T  19751149 caccactagcttataatccggctcaatttgcac 19751181  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 10486495 - 10486543
Alignment:
Q  61 aagatggaatcaaatcaaaaacatggtgactatcatacaattttgactc 109  Q
    ||||||||||| |||||||||||||||||| |   ||||||||||||||    
T  10486495 aagatggaatcgaatcaaaaacatggtgacaagtgtacaattttgactc 10486543  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 270
Target Start/End: Original strand, 2704058 - 2704193
Alignment:
Q  135 aaaacttatcttaaagtttagaaattgttgtaatagcgatctacaagtagacataatattgccataatctgattagttgttagatttatccatgatacct 234  Q
    |||||||||||||||||||  |||||| | ||| || ||||||||||  || || ||||||||| | || |||| ||||||||| || |||||||| |      
T  2704058 aaaacttatcttaaagtttctaaattgatttaaaagtgatctacaagaggatattatattgccaaagtcagattggttgttagaattttccatgatgctg 2704157  T
Q  235 tccatcactagctttccatctagctcaatttgcacc 270  Q
    |||| ||||||||| | |||||||||||||||||||    
T  2704158 tccaccactagcttacaatctagctcaatttgcacc 2704193  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 248
Target Start/End: Complemental strand, 35653280 - 35653171
Alignment:
Q  139 cttatcttaaagtttagaaattgttgtaatagcgatctacaagtagacataatattgccataatctgattagttgttagatttatccatgataccttcca 238  Q
    ||||||||||||| | | |||||||||||||||||||||||| ||||| |||||||| || | | |||| |||| ||| ||||| |||||||  | ||||    
T  35653280 cttatcttaaagtctgggaattgttgtaatagcgatctacaattagacgtaatattgtcaaagtttgatcagttattaaatttacccatgatgacatcca 35653181  T
Q  239 tcactagctt 248  Q
     |||||||||    
T  35653180 ccactagctt 35653171  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 22642813 - 22642870
Alignment:
Q  61 aagatggaatcaaatcaaaaacatggtgactatcatacaattttgactcccttgctaa 118  Q
    |||||| |||||||||||| || ||||||||| ||||||| || |||||||| |||||    
T  22642813 aagatgaaatcaaatcaaatacttggtgactagcatacaaattcgactccctcgctaa 22642870  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 4816820 - 4816748
Alignment:
Q  59 ataagatggaatcaaatcaaaaacatggtgactatcatacaattttgactcccttgctaatgtattggcgaca 131  Q
    |||||||| |||||||||||| || ||||||| | |||||||||||||||||||||||||  ||| |||||||    
T  4816820 ataagatgaaatcaaatcaaagacttggtgacgagcatacaattttgactcccttgctaagctatgggcgaca 4816748  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 5299545 - 5299488
Alignment:
Q  61 aagatggaatcaaatcaaaaacatggtgactatcatacaattttgactcccttgctaa 118  Q
    |||||||||||||||  ||||| ||||||| | || ||||||||| ||||||||||||    
T  5299545 aagatggaatcaaattgaaaacgtggtgacgagcacacaattttgcctcccttgctaa 5299488  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 46496900 - 46496843
Alignment:
Q  61 aagatggaatcaaatcaaaaacatggtgactatcatacaattttgactcccttgctaa 118  Q
    ||||||||||||||| |||||| ||||||| | ||||||| |||| |||| |||||||    
T  46496900 aagatggaatcaaataaaaaacctggtgacgagcatacaaatttgcctcctttgctaa 46496843  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 19023364 - 19023408
Alignment:
Q  135 aaaacttatcttaaagtttagaaattgttgtaatagcgatctaca 179  Q
    |||||||||||||||||||  ||||||||||||||| || |||||    
T  19023364 aaaacttatcttaaagtttgaaaattgttgtaatagagacctaca 19023408  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 29542314 - 29542257
Alignment:
Q  61 aagatggaatcaaatcaaaaacatggtgactatcatacaattttgactcccttgctaa 118  Q
    ||||||||||| |||||||||||||||||| | | ||||||||||||||||| |||||    
T  29542314 aagatggaatcgaatcaaaaacatggtgacgagcgtacaattttgactccctagctaa 29542257  T

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