View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9930_high_18 (Length: 267)
Name: NF9930_high_18
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9930_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 2688498 - 2688748
Alignment:
| Q |
1 |
accaaacgttccgagccaaatcacaatggagaaaaagatgagaggtggtctctgtgaatgccgaacacccaacacaattgctatcaatatcgggaggtaa |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2688498 |
accaaacattccgagccaaatcacaatggagaaaaagatgagaggtggtctctgtgaatgccgaacacccaacacaattgctatcaatactgggaggtaa |
2688597 |
T |
|
| Q |
101 |
acaattccgaatttccaaattcctacgagttggaatccggtcaagaagagttttccaaacaaagaccctcacttttgaaggtgtctcccttccaaatttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2688598 |
acaattccgaatttccaaattcctacgagttggaatccggtcaagaagagttttccaaacaaagaccctcacttttgaaggtgcctcccttccaaatttg |
2688697 |
T |
|
| Q |
201 |
acgaaacacttgcctttccccctccgaccacacaacctcccccaaccctct |
251 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2688698 |
acgaaacactcgcctttccccctccgaccacacaacctcccccaaccctct |
2688748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 251
Target Start/End: Original strand, 42774045 - 42774207
Alignment:
| Q |
91 |
cgggaggtaaacaattccgaatttccaaattcctacgagttggaatccggtcaagaagagttttccaaacaaagaccctcacttttgaaggtg--tctcc |
188 |
Q |
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||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||| |||||| |||||| ||||||| ||||| |||| || | |
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| T |
42774045 |
cgggaggtaaacaattccgtttttccaaattaatacgagtcggaatacggtcaagaagagatttccacacaaaggccctcacctttgacggtgccgctac |
42774144 |
T |
|
| Q |
189 |
cttccaaatttgacgaaacacttgcctttccccctccgaccacacaacctcccccaaccctct |
251 |
Q |
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||||||||| ||||||||||| ||||||||| |||| | || ||||||||||||||||| |
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| T |
42774145 |
cttccaaatatgacgaaacaccctcctttccccttccggacgaactacctcccccaaccctct |
42774207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 20794333 - 20794162
Alignment:
| Q |
1 |
accaaacgttccgagccaaatcacaatggagaaaaagatgagaggtggtctctgtgaatgccgaacacccaacacaattgctatcaatatcgggaggtaa |
100 |
Q |
| |
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||||||| ||||| |||||||||||||| || || ||||| ||||| | ||| | ||| ||| | | ||||||||| || ||| | |||||||||| |
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| T |
20794333 |
accaaacattccgggccaaatcacaatgaaggaagagatgtgaggtagactcggagaaatccgtagaatgaacacaattacttccaacaccgggaggtaa |
20794234 |
T |
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| Q |
101 |
acaattccgaatttccaaattcctacgagttggaatccggtcaagaagagttttccaaacaaagaccctcac |
172 |
Q |
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||||||||||||| ||||||| ||| || |||||||| |||||||||| ||||||||||||| ||||||| |
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| T |
20794233 |
acaattccgaattcccaaattaacacgcgtcggaatccgatcaagaagagctttccaaacaaaggccctcac |
20794162 |
T |
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