View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9930_high_25 (Length: 233)
Name: NF9930_high_25
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9930_high_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 152
Target Start/End: Original strand, 32842255 - 32842375
Alignment:
| Q |
32 |
agttaagacatcaagattcaagataaatgtttttcaatgtaatttaaattagtggtgaaaaccacatgctggagtgtttagggattgtagattatagccg |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | |
|
|
| T |
32842255 |
agttaagacatcaagattcaagataaatgtttttcactgtaatttaaattagtggtgaaaaccacattatggagtgtttaaggattgtagattatagttg |
32842354 |
T |
|
| Q |
132 |
ttgagattgagttgaagtctt |
152 |
Q |
| |
|
|| || || |||||||||||| |
|
|
| T |
32842355 |
ttaagcttaagttgaagtctt |
32842375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 32829563 - 32829695
Alignment:
| Q |
23 |
cgagagttaagttaagacatcaagattcaagataaatgtttttcaatgtaatttaaattagtggtgaaaaccacatgctggagtgtttagggattgtaga |
122 |
Q |
| |
|
||||||||| |||||||||||||||||| | ||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32829563 |
cgagagttaggttaagacatcaagattcgatataaatgtttttcgctgtgatttgaattagtggtgaaaaccacgtgctggagtgtttagggattgtaga |
32829662 |
T |
|
| Q |
123 |
ttatagcc---gttgagattgagttgaagtctt |
152 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| |
|
|
| T |
32829663 |
ttatagccgttgttgagactgagttgaagtctt |
32829695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 32831559 - 32831598
Alignment:
| Q |
178 |
gatattgcacactctcatatggctgagcatccaaataatc |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32831559 |
gatattgcacactctcatatggtcgagcatccaaataatc |
32831598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 32844830 - 32844869
Alignment:
| Q |
178 |
gatattgcacactctcatatggctgagcatccaaataatc |
217 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
32844830 |
gatattgcacactctcatatgactaagcatccaaataatc |
32844869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 17936806 - 17936690
Alignment:
| Q |
32 |
agttaagacatcaagattcaagataaatgtttttcaatgtaatttaaattagtggtgaaaaccacatgctggagtgtttagggattgtagattatagccg |
131 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| || ||||||||||||||| ||||||||||| ||| |||| ||||||||||| ||||||||||| | |
|
|
| T |
17936806 |
agttaagacatcaagattctagataaatatttt-cactgtaatttaaattagaggtgaaaaccatatgttggattgtttagggatcgtagattatagtgg |
17936708 |
T |
|
| Q |
132 |
ttgagattgagttgaagt |
149 |
Q |
| |
|
|| || || ||||||||| |
|
|
| T |
17936707 |
ttaagcttaagttgaagt |
17936690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University