View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9930_high_27 (Length: 220)

Name: NF9930_high_27
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9930_high_27
NF9930_high_27
[»] chr6 (11 HSPs)
chr6 (1-203)||(3173013-3173215)
chr6 (42-203)||(4489113-4489274)
chr6 (3-205)||(4575469-4575669)
chr6 (5-205)||(4481880-4482079)
chr6 (42-205)||(4561713-4561876)
chr6 (42-203)||(4503209-4503370)
chr6 (10-203)||(4462230-4462422)
chr6 (124-193)||(4471050-4471119)
chr6 (136-203)||(4265973-4266040)
chr6 (43-203)||(4623359-4623519)
chr6 (44-86)||(4470970-4471012)
[»] scaffold0477 (1 HSPs)
scaffold0477 (124-188)||(3453-3517)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 3173013 - 3173215
Alignment:
Q  1 atacacacatctctttggaagaaaaagggattataaatgatattacctttgagtggcagtaaaccattctgaaacagtttaggaatatgaaaaccagcca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  3173013 atacacacatctctttggaagaaaaagggattataaatgatattacctttgagtggtagtagaccattctgaaacaatttaggaatatgaaaaccagcca 3173112  T
Q  101 agaagaaacaagcactacatggcgaaaatagaacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagca 200  Q
    |||||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3173113 agaagaaacatgcactacacggcgaaaatagaacaattgggagagcatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagca 3173212  T
Q  201 agt 203  Q
    |||    
T  3173213 agt 3173215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 4489274 - 4489113
Alignment:
Q  42 attacctttgagtggcagtaaaccattctgaaacagtttaggaatatgaaaaccagccaagaagaaacaagcactacatggcgaaaatagaacaattggg 141  Q
    ||||||||||||||| || | |||||||||||||| ||||| ||| ||||||  ||   ||||| || | ||||||||||| ||||| ||||||||||||    
T  4489274 attacctttgagtggtagcacaccattctgaaacaatttagtaatgtgaaaagtagagtagaagtaagatgcactacatggggaaaagagaacaattggg 4489175  T
Q  142 agtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagt 203  Q
    |||| ||||||||||||| ||||||||||||||| ||||| |||||| ||||| ||||||||    
T  4489174 agtgcatgttcttcagcagcatctactgtaaatgccatattgcaatcagaaactaagcaagt 4489113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 4575469 - 4575669
Alignment:
Q  3 acacacatctctttggaagaaaaagggattataaatgatattacctttgagtggcagtaaaccattctgaaacagtttaggaatatgaaaaccagccaag 102  Q
    ||||| |||||||  |||||||||||||  | |||||||  ||||||||| ||| | |  || |||| || ||| ||||||| |  | |||| || ||||    
T  4575469 acacagatctcttaagaagaaaaagggaacaaaaatgat--tacctttgaatggtacttgactattcagatacattttaggactgagcaaacaagacaag 4575566  T
Q  103 aagaaacaagcactacatggcgaaaatagaacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaag 202  Q
    ||  |||| ||||||||||| ||||| |||||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||||    
T  4575567 aaataacatgcactacatggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaag 4575666  T
Q  203 tga 205  Q
    |||    
T  4575667 tga 4575669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 4481880 - 4482079
Alignment:
Q  5 acacatctctttggaagaaaaagggattataaatgatattacctttgagtggcagtaaaccattctgaaacagtttaggaatatgaaaaccagccaagaa 104  Q
    ||||||||||| | ||||||||| ||  ||||||||||| |||||||||||| || | |||||||||||||| |||||||||   | ||  ||  |  ||    
T  4481880 acacatctcttagaaagaaaaagagaacataaatgatat-acctttgagtggtagcacaccattctgaaacaatttaggaatcaaagaagtagagagtaa 4481978  T
Q  105 gaaacaagcactacatggcgaaaatagaacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtg 204  Q
    | |||| |||||    || ||||| |||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||||||| ||||| |||||||||    
T  4481979 gtaacatgcactgaccggggaaaagagaacaattgggagtgcatgttcttcggcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtg 4482078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 4561713 - 4561876
Alignment:
Q  42 attacctttgagtggcagtaaaccattctgaaacagtttaggaatatgaaaaccagccaagaagaaacaagcactacatggcgaaaatagaacaattggg 141  Q
    ||||||||||| ||| |||  || ||||||| ||| ||||||| |  | |||| |||||||||  |||| || |||| ||| ||||| ||||||| ||||    
T  4561713 attacctttgaatggtagttgactattctgatacattttaggactgagcaaacaagccaagaaataacatgctctacttggggaaaaaagaacaactggg 4561812  T
Q  142 agtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagtga 205  Q
    |||| ||||||||||||| || |||||||||||||||| |||||||| ||||| ||||||||||    
T  4561813 agtgcatgttcttcagcagcagctactgtaaatggcatgtagcaatcagaaactaagcaagtga 4561876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 203
Target Start/End: Complemental strand, 4503370 - 4503209
Alignment:
Q  42 attacctttgagtggcagtaaaccattctgaaacagtttaggaatatgaaaaccagccaagaagaaacaagcactacatggcgaaaatagaacaattggg 141  Q
    ||||||||||||||| || | || ||| ||||||| ||||| ||| ||||||  ||   ||||| || | ||||||||||| ||||  ||||||||||||    
T  4503370 attacctttgagtggtagcatactattgtgaaacaatttagcaatgtgaaaagtagagtagaagtaagatgcactacatggggaaacgagaacaattggg 4503271  T
Q  142 agtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagt 203  Q
    |||| ||||||||||||| ||| ||||| ||||||||| | |||||| ||||| ||||||||    
T  4503270 agtgtatgttcttcagcagcatatactggaaatggcatgttgcaatcagaaactaagcaagt 4503209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 4462230 - 4462422
Alignment:
Q  10 tctctttggaagaaaaagggattataaatgatattacctttgagtggcagtaaaccattctgaaacagtttaggaatatgaaaaccagccaagaagaaac 109  Q
    |||||| ||||||||||||||  | | ||||||| ||||||||||||||| | |||||||||||||| ||||||||| ||| ||  ||  |   || |||    
T  4462230 tctcttaggaagaaaaagggaacaaagatgatat-acctttgagtggcagcacaccattctgaaacaatttaggaatgtgagaagtagtgagtgagcaac 4462328  T
Q  110 aagcactacatggcgaaaatagaacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagt 203  Q
    | |||||    || ||||| ||||| |||||||||| | ||| ||||||  |||| |||||||||||||| || ||||| ||||| | ||||||    
T  4462329 atgcactgaccggggaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagt 4462422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 4471050 - 4471119
Alignment:
Q  124 gaaaatagaacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaa 193  Q
    ||||| ||||| |||||||||| | ||||||||||| ||||||||||||||||||| || ||||| ||||    
T  4471050 gaaaagagaacgattgggagtgcacgttcttcagcagcatctactgtaaatggcatgtaacaatcagaaa 4471119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 4266040 - 4265973
Alignment:
Q  136 attgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagt 203  Q
    |||||||||| ||||||||| ||| |||||| |||||| ||||| || ||||||||||| ||||||||    
T  4266040 attgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagt 4265973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 203
Target Start/End: Original strand, 4623359 - 4623519
Alignment:
Q  43 ttacctttgagtggcagtaaaccattctgaaacagtttaggaatatgaaaaccagccaagaagaaacaagcactacatggcgaaaatagaacaattggga 142  Q
    |||||||||||||| | || ||| |||| ||||||| || |||  || ||| ||| |||||||  ||  ||||||  ||| || || | |||||||||||    
T  4623359 ttacctttgagtggtattagacctttctcaaacagtgtatgaaagtgtaaaacagacaagaaggtacttgcactagctggggagaagaaaacaattggga 4623458  T
Q  143 gtgaatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaagcaagt 203  Q
    ||| ||| ||||||||| | | || |||||||| ||| || ||||||||||| ||||||||    
T  4623459 gtgcatgctcttcagcagcttgtattgtaaatgacatgtaacaatcggaaactaagcaagt 4623519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 4470970 - 4471012
Alignment:
Q  44 tacctttgagtggcagtaaaccattctgaaacagtttaggaat 86  Q
    |||||||||||||||| | |||||||||||||| |||||||||    
T  4470970 tacctttgagtggcagcacaccattctgaaacaatttaggaat 4471012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 3517 - 3453
Alignment:
Q  124 gaaaatagaacaattgggagtgaatgttcttcagcaacatctactgtaaatggcatatagcaatc 188  Q
    ||||| |||||||||||||||| ||||||||||||| | | ||  ||||||||||| || |||||    
T  3517 gaaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatggcatgtaacaatc 3453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University