View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9930_high_6 (Length: 381)
Name: NF9930_high_6
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9930_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 38002762 - 38002401
Alignment:
| Q |
18 |
ccaatcaatatgaatttaaattttgatgttggtggaatataatggaatactatgggatgtgtcttgtatagtaag----atgaaccatattattggagga |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38002762 |
ccaatcaatatgaatttaaattttgatgttggtggaatataatggaatactatgggatgtgtcttgtatagtaagtaagatgaaccatattattggagga |
38002663 |
T |
|
| Q |
114 |
ttcaaaacgacctctatcaaaaatagttttagctnnnnnnntaagattatttttgtccttatatatatgccaaaccataacaatctagttagaggtagaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38002662 |
ttcaaaacgacctctatcaaaaatagttttagctaaaaaaataagattatttttgtccttatatatatgccaaaccataaaaatctagttagaggtagaa |
38002563 |
T |
|
| Q |
214 |
acaccaacgccatttgaggagagattcaaatgtaaccaatcattaagacctggcctagagaatttactcaaatccctttaataagatgatccaaaagttc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38002562 |
acaccaacgccatttgaggagagattcaaatgtaaccaatcattaagacctggcctagagaatttactcaaatccctttaataagatgatccaaaagttc |
38002463 |
T |
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| Q |
314 |
tcaaacgtagtcacaatctctaagtaaatgcataattgtttcctcctaagcacaacaccaaa |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
38002462 |
tcaaacgtagtcacaatctctaagtaaatgcataattgtttcctcctaagcaccacatcaaa |
38002401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 36275973 - 36276073
Alignment:
| Q |
18 |
ccaatcaatatgaatttaaattttgatgttggtggaatataatggaatactatgggatgtgtcttgtatagtaagatgaaccatattattggaggattca |
117 |
Q |
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|||| ||||||||| | |||||||||||| || || |||| | |||||| || ||||||||| ||| ||||||| |||||| |||||||||||||| |
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| T |
36275973 |
ccaaacaatatgaaactcaattttgatgttagtagagtatatagaaatactgtgaattgtgtcttgcataataagatggaccataatattggaggattca |
36276072 |
T |
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| Q |
118 |
a |
118 |
Q |
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| T |
36276073 |
a |
36276073 |
T |
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