View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9930_high_9 (Length: 327)
Name: NF9930_high_9
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9930_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 171743 - 171444
Alignment:
| Q |
18 |
atcttaactttgcaggttcaagagggaagccataacctccttcctcttcaggattgtacttctcactaatgcattttgaattacactgcccttgtctctt |
117 |
Q |
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| T |
171743 |
atcttaactttgcaggttcaagagggaagccataacctccttcctcttcaggattgtacttctcactaatgcattttgaattacactgcccttgtctctt |
171644 |
T |
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| Q |
118 |
ctgcaggnnnnnnnnn-tcacatggaaaatgatgaatcaggcaaatccaaacaattctagcaaagaagtttcattaacactatctttatgatttaaagta |
216 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
171643 |
ctgcaggaaaaaaaaaatcacatggaaaatgatgaatcaggcaaatccaaacaattctagcaaagaagtttcattaacactatctttatgatttaaagta |
171544 |
T |
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| Q |
217 |
cctctattgatgactgaatctcaacattagcatcaggtgctggcacaactttagactctttaaaattccatccaactgattcctgtcttacatgtccttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
171543 |
cctctattgatgactgaatctcaacattagcatcaggtgctggcacaactttagactctttaaaattccatccaactgattcctgtcttacatgtccttt |
171444 |
T |
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