View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9930_low_11 (Length: 324)
Name: NF9930_low_11
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9930_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 316
Target Start/End: Complemental strand, 1877769 - 1877463
Alignment:
| Q |
7 |
tggtgttgacaaaatatcttaaaagttttgtaaattaatagtattattttgttaccatttacatggaaaattgggccatgatatgaatataacnnnnnnn |
106 |
Q |
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| T |
1877769 |
tggtgttgacaaaatatcttaaaagttttgtaaattaatagtattattttgttaccatttacatggaaaattgggc-atgatatcaatataa-taaaaaa |
1877672 |
T |
|
| Q |
107 |
nnntcttttcacattgtcgcactcccaatttttcgatttcaaaactcaaaaatgaaggattttttaacgtgttttgtgcttttcaaattaaataattgaa |
206 |
Q |
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| T |
1877671 |
aaatcttttcacattgtcgcactcccaatttttcgattttaaaactcaaaaatgaaagattttttaacgtgtttcgtgcttttcaaattaaataattgaa |
1877572 |
T |
|
| Q |
207 |
aatctcgtaagatatacgagaaacaagtagaattgnnnnnnnnnntcttgtataacaacagtgaaaatgacaacttcactgccacgataatttagattta |
306 |
Q |
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| T |
1877571 |
aatctcgtaagatatacgagaaacaagtagaatag-aaaaaaaaatcttgtataacaacggtgaaaatgacaacttcactgccacgataatttagattta |
1877473 |
T |
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| Q |
307 |
gcatcttcaa |
316 |
Q |
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|||||||||| |
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| T |
1877472 |
gcatcttcaa |
1877463 |
T |
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