View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9930_low_17 (Length: 274)
Name: NF9930_low_17
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9930_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 40085371 - 40085636
Alignment:
| Q |
1 |
aacttaacacaattttcatctctgatcctgagcgacgcggcccttacgagttccttgaaatcatcatcacttgtggttgatgttgtagagttaacactga |
100 |
Q |
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| T |
40085371 |
aacttaacacaattttcatctctgatcctaagcgacgcggcccttacgagttccttgaaatcatcatcacttatggtcgatgttgtagagttaacactga |
40085470 |
T |
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| Q |
101 |
agctcctaggaaaggagtaaagttgcgtaggacatcccatggttgcatgatctacataggcaaaatcacgagaacattggatcatgccattgacatacat |
200 |
Q |
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| T |
40085471 |
agctcctaggaaaggagtaaagttgcgtaggacatcccatggttgcatgatctacataggcaaaatcacgagaacattggatcatgccattgacatacat |
40085570 |
T |
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| Q |
201 |
gtcctttacctttaccaggaaccttaagggtgccttcatgtacctggtgagtttgcttcctttgct |
266 |
Q |
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| T |
40085571 |
gtcctttaactttaccaggaaccttaagggtgccttcatgtacctggtgagcttgcttcctttgct |
40085636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 40081081 - 40081154
Alignment:
| Q |
170 |
gagaacattggatcatgccattgacatacatgtcctttacctttaccaggaaccttaagggtgccttcatgtac |
243 |
Q |
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| T |
40081081 |
gagaacaatggatcatgccacggacgtacaagtcctttacctttgtcaacaaccttaaaggtgccttcatgtac |
40081154 |
T |
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