View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9930_low_18 (Length: 269)
Name: NF9930_low_18
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9930_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 42313359 - 42313114
Alignment:
| Q |
1 |
ttgtatttccattcttagttttaaattaaaatttatacatgtctccaaatttctaggccactatctgaattgtagcatgtgttgtttggaattggattat |
100 |
Q |
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| T |
42313359 |
ttgtatttccattcgtagttttaaattaaaatttatacatgtctccaaatttctaggccactatctgaattgtagcatgtgttgtttggaattggattat |
42313260 |
T |
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| Q |
101 |
gctcttaacatgaaatgtctttgatctcttgcagagcttacagaagatgctcacttgtggtattcattcatgggctcctcgacttcctgtcaagaggatt |
200 |
Q |
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| T |
42313259 |
gctcttaacatgaaatgtctttgatctcttgcagagcttacagaagatgctcacttctggtattcattcatgggctcctcgacttcctgtcaagaggatt |
42313160 |
T |
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| Q |
201 |
ctggttgacttttcctcgcctaatatagcaaaagaaatgcatgttg |
246 |
Q |
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| T |
42313159 |
ctggttgacttttcctcgcctaatatagcaaaagaaatgcatgttg |
42313114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 246
Target Start/End: Original strand, 51565006 - 51565122
Alignment:
| Q |
130 |
tgcagagcttacagaagatgctcacttgtggtattcattcatgggctcctcgacttcctgtcaagaggattctggttgacttttcctcgcctaatatagc |
229 |
Q |
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| T |
51565006 |
tgcagagcttacagaggatgcttaccgatggtattgattcatgggcacctcgacttccaatcaagagggttatggttgacttttcctcacccaatatagc |
51565105 |
T |
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| Q |
230 |
aaaagaaatgcatgttg |
246 |
Q |
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| T |
51565106 |
aaaagaaatgcatgttg |
51565122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 47977846 - 47977730
Alignment:
| Q |
130 |
tgcagagcttacagaagatgctcacttgtggtattcattcatgggctcctcgacttcctgtcaagaggattctggttgacttttcctcgcctaatatagc |
229 |
Q |
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|||||||||||||||||||||| || ||||||| |||||||||| ||||||||||| |||||||| || |||||||||||||||| || |||||||| |
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| T |
47977846 |
tgcagagcttacagaagatgcttaccgatggtattgattcatgggcacctcgacttccaatcaagagggttatggttgacttttcctcaccgaatatagc |
47977747 |
T |
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| Q |
230 |
aaaagaaatgcatgttg |
246 |
Q |
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| T |
47977746 |
caaagaaatgcatgttg |
47977730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 34028832 - 34028920
Alignment:
| Q |
158 |
tggtattcattcatgggctcctcgacttcctgtcaagaggattctggttgacttttcctcgcctaatatagcaaaagaaatgcatgttg |
246 |
Q |
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||||||| || | ||||| ||||||||||| ||| |||| | ||||||| |||||||| |||||||||||||| ||||||||||||| |
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| T |
34028832 |
tggtattgatacctgggcacctcgacttccaatcaggagggctatggttgatttttcctctcctaatatagcaaaggaaatgcatgttg |
34028920 |
T |
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