View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9930_low_2 (Length: 553)
Name: NF9930_low_2
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9930_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Complemental strand, 49904285 - 49903832
Alignment:
| Q |
18 |
agaagcacctttggaggctaaaaattgaaactttggcaaaatggttttaatggggttgtaaacgatgagcaatggaatcttgcgaatgatggtttgtatc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49904285 |
agaagcacctttggaggctaaaaattgaaactttggcaaaatggttttaatggggttgtaaacgatgagcaatggaatcttgcgaatgatggtttgtatc |
49904186 |
T |
|
| Q |
118 |
tggtgatcggagaaaccgtgggttttgaaaaaggcgataacggaatcgggtttgtcgggagtgttgaaacgaagtcgtttggatgctttgagagcatctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49904185 |
tggtgatcggagaaaccgtgggttttgaaaaaggcgataacggaatcgggtttgtcgggagtgttgaaacgaagtcgtttggatgctttgagagcatctt |
49904086 |
T |
|
| Q |
218 |
gtggagataaagcgcaattgttggtgaggtaggaaactgggaaagagtgttgatctgaatcagaagtggtgttgagagagtggtggggttggagaagaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49904085 |
gtggagataaagcgcaattgttggtgaggtaggaaactgggaaagagtgttgatctgaatcagaagtggtgttgagagagtggtggggttggagaagaag |
49903986 |
T |
|
| Q |
318 |
aaggtaacaacattttggggttttggaaagattgttgaggtagagaagagttctgagacaacaatgatggtgaaacattgagaggaaatgtcaattccgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49903985 |
aaggtaacaacattttggggttttggaaagattgttgaggtagagaagagttctcagacaacaatgatagtgaaacattgagaggaaatgtcaattccgt |
49903886 |
T |
|
| Q |
418 |
ttccaaaatgattataggaagaagaagaaaaaattactaattcatattgtgttatat |
474 |
Q |
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| T |
49903885 |
ttccaaaatgattataggaagaagaagaaaaaat---taattcatattgtgttatat |
49903832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 25 - 278
Target Start/End: Original strand, 49563152 - 49563405
Alignment:
| Q |
25 |
cctttggaggctaaaaattgaaactttggcaaaatggttttaatggggttgtaaacgatgagcaatggaatcttgcgaatgatggtttgtatctggtgat |
124 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||| ||| |||||||| | |||| | || ||| | |||| ||||||| ||||||||| | | |
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| T |
49563152 |
cctttggaagctaaaaattgaagctttggcaaaatggatttgatggggtttgagacgaaaaccaggggatccctgcggatgatggattgtatctgatcaa |
49563251 |
T |
|
| Q |
125 |
cggagaaaccgtgggttttgaaaaaggcgataacggaatcgggtttgtcgggagtgttgaaacgaagtcgtttggatgctttgagagcatcttgtggaga |
224 |
Q |
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||||||||| ||||||||||||||||| ||||| | ||||||||| || || |||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
49563252 |
tggagaaaccatgggttttgaaaaaggcaataacagtatcgggtttatccggggtgttgaaacgaagtcgtttagatgctttgagagcatcttgtgaaga |
49563351 |
T |
|
| Q |
225 |
taaagcgcaattgttggtgaggtaggaaactgggaaagagtgttgatctgaatc |
278 |
Q |
| |
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||| || |||||||||||||||||||||||| |||||| ||||||||||||| |
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|
| T |
49563352 |
taagccgaaattgttggtgaggtaggaaactgtgaaagatggttgatctgaatc |
49563405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 49559025 - 49559126
Alignment:
| Q |
105 |
gatggtttgtatctggtgatcggagaaaccgtgggttttgaaaaaggcgataacggaatcgggtttgtcgggagtgttgaaacgaagtcgtttggatgct |
204 |
Q |
| |
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||||||||||||||| |||| ||||||| |||||||||||||||||| |||||| ||||||| ||||| || ||||| ||||||||| ||||||||||| |
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| T |
49559025 |
gatggtttgtatctgatgattggagaaagcgtgggttttgaaaaaggagataaccgaatcggctttgtgaggggtgtttaaacgaagttgtttggatgct |
49559124 |
T |
|
| Q |
205 |
tt |
206 |
Q |
| |
|
|| |
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|
| T |
49559125 |
tt |
49559126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 492 - 553
Target Start/End: Complemental strand, 49903771 - 49903710
Alignment:
| Q |
492 |
aagggtgtttagagtttgtctgaccttagctcaattgataataaaattacataatttatata |
553 |
Q |
| |
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|||| |||||||||| | |||||||||| |||||||||||| ||||||||||||||| |||| |
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| T |
49903771 |
aaggatgtttagagtgtctctgaccttatctcaattgataagaaaattacataatttttata |
49903710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 49558982 - 49559023
Alignment:
| Q |
18 |
agaagcacctttggaggctaaaaattgaaactttggcaaaat |
59 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||||||||| |
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| T |
49558982 |
agaagcacctttggagtataaaaattgaatctttggcaaaat |
49559023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 49553411 - 49553371
Alignment:
| Q |
18 |
agaagcacctttggaggctaaaaattgaaactttggcaaaa |
58 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |||| |
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| T |
49553411 |
agaagcacctttggagagtaaaaattgaaactttggtaaaa |
49553371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 248
Target Start/End: Original strand, 41483645 - 41483739
Alignment:
| Q |
154 |
ataacggaatcgggtttgtcgggagtgttgaaacgaagtcgtttggatgctttgagagcatcttgtggagataaagcgcaattgttggtgaggta |
248 |
Q |
| |
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||||| || ||||| |||||||| |||||||||| ||||| |||||||||||| ||||| |||||||| |||||| | ||| |||| |||||||| |
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| T |
41483645 |
ataacagagtcgggattgtcgggtgtgttgaaaccaagtcatttggatgctttaagagcttcttgtggtgataaaccacaagtgttagtgaggta |
41483739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 14520158 - 14520119
Alignment:
| Q |
17 |
aagaagcacctttggaggctaaaaattgaaactttggcaa |
56 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |
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| T |
14520158 |
aagaagcacctttggagagtaaaaattgaaactttggcaa |
14520119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 14476157 - 14476197
Alignment:
| Q |
18 |
agaagcacctttggaggctaaaaattgaaactttggcaaaa |
58 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||| |
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|
| T |
14476157 |
agaagcacctttggagagaaaaaattgaaactttggcaaaa |
14476197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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