View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9930_low_25 (Length: 243)
Name: NF9930_low_25
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9930_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 32552631 - 32552870
Alignment:
| Q |
5 |
tgactcttttcaattgaatcatactcaacacatat-aaaaagaattaccgtacgatttcagctagt----------aaatatgtttgcttaataac---- |
89 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||| || |||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
32552631 |
tgactcttttaacttgaatcatactcaagacaaatcaaaaagaattaccgtacgatttcagctagtgttgaaaagtaaatatgtttgcttaattatagta |
32552730 |
T |
|
| Q |
90 |
-tgaaaattatccaaagtaatagaaatcattata-----cagctcaaaagacagaacaaaagtactgttaaaatgtttgatttcatttatagtgtcgccg |
183 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32552731 |
ttgaacattatccaaagtaatagaaatcattatattatacagctcaa--gacagaacaaaagtactgttaaaatgtttgatttcatttatagggtcgccg |
32552828 |
T |
|
| Q |
184 |
atggcagcacgatgaggtggtgatctaatccgccatgatacg |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32552829 |
atggcagcacgatgaggtggtgatctaatccgccatgatacg |
32552870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 67 - 225
Target Start/End: Original strand, 32549209 - 32549368
Alignment:
| Q |
67 |
agtaaatatgtttgcttaataactgaaaattatccaaagtaatagaaatcattatacagctcaaaagacagaacaaaagtactgttaaaatgtttgattt |
166 |
Q |
| |
|
||||||||||||| |||| |||||||| |||| |||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32549209 |
agtaaatatgtttatttaaatgctgaaaatcatcccaagtaaaagaaatcatcatacagctcaa--gacagaacaaaagtactgttaaaatgtttgattt |
32549306 |
T |
|
| Q |
167 |
catttatagtgtcgccgat---ggcagcacgatgaggtggtgatctaatccgccatgatacg |
225 |
Q |
| |
|
|||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32549307 |
catttatagtgtcgcctatggcggcagcaagatgaggtggtgatctaatccgccatgatacg |
32549368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University