View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9930_low_29 (Length: 236)
Name: NF9930_low_29
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9930_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 45174933 - 45174716
Alignment:
| Q |
1 |
ttccatttctacggtgttcctttgttaactctatttgttttatttacagaaaactgcccaacttttgcagtaaattgcgcaaatgaatgaagtactgata |
100 |
Q |
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| T |
45174933 |
ttccatttctacggtgttcctttgctaactctatttgttttatttacagaaaactgcccaacttttgcagtaaattgcgcaaatgaatgaagtactgata |
45174834 |
T |
|
| Q |
101 |
gatcgtcacaaagctttggctgcaaaagtggttaacttattggctaagatttgtgaagttggtagctgttgaccatattcatgaagatcaccgaacccgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45174833 |
gatcgtcacaaagctttggctgcaaaagtggttaacttattggctaagatttgtgaagttggtagctattgaccatattcatgaagatcaccgaacccgt |
45174734 |
T |
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| Q |
201 |
agagtttgagcacctgat |
218 |
Q |
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|||||||||||||||||| |
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| T |
45174733 |
agagtttgagcacctgat |
45174716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 45174316 - 45174129
Alignment:
| Q |
1 |
ttccatttctacggtgttcctttgttaactctatttgttttatttacagaaaactgcccaacttttgcagtaaattgcgcaaatgaatgaagtactgata |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| | |||||||| |
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| T |
45174316 |
ttccatttctacggtgttcctttgctaactctatttgttttatttacagaaaactgcccagcctttgcaccaaattgcgcaaatgaacaatatactgata |
45174217 |
T |
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| Q |
101 |
gatcgtcacaaagctttggctgcaaaagtggttaacttattggctaagatttgtgaagttggtagctgttgaccatattcatgaagat |
188 |
Q |
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| T |
45174216 |
gatcgccacaaagctttggctgcaaaagtggttaacttattggctaaggtttgggaatttggtagctattgaccatattcatgaagat |
45174129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 45183555 - 45183458
Alignment:
| Q |
38 |
ttttatttacagaaaactgcccaacttttgcagtaaattgcgcaaatgaatgaagtactgatagatcgtcacaaagctttggctgcaaaagtggttaa |
135 |
Q |
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|||||||||||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45183555 |
ttttatttacagaaaattgcccaacttttgcaccagattgcgcaaatgaatgaaatactgatagatcgccacaaagctttggctgcaaaagtggttaa |
45183458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 45170463 - 45170400
Alignment:
| Q |
94 |
actgatagatcgtcacaaagctttggctgcaaaagtggttaacttattggctaagatttgtgaa |
157 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||| |||||||||| |||||||| |
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| T |
45170463 |
actgatagaatgtcacaaagctttggccgcaaaagtggttaactaattggctaaggtttgtgaa |
45170400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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