View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9930_low_3 (Length: 473)

Name: NF9930_low_3
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9930_low_3
NF9930_low_3
[»] chr8 (2 HSPs)
chr8 (232-423)||(43884893-43885084)
chr8 (55-111)||(29157419-29157475)
[»] chr2 (2 HSPs)
chr2 (29-111)||(2596407-2596489)
chr2 (30-107)||(2581720-2581797)
[»] chr7 (1 HSPs)
chr7 (226-321)||(46770523-46770621)
[»] chr4 (1 HSPs)
chr4 (55-99)||(19359602-19359646)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 232 - 423
Target Start/End: Original strand, 43884893 - 43885084
Alignment:
Q  232 ttaacctttttagtattgacattgacactataagtagttgaggaggggtaattggtaaatggtgatatggaaaacctgttcttagttgatgttgtcctga 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43884893 ttaacctttttagtattgacattgacactataagtagttgaggaggggtaattggtaaatggtgatatggaaaacctgttcttagttgatgttgtcctga 43884992  T
Q  332 tggacttatcaaatgctaataaaagtcttagatgatatagtggtttagttggtttgtgtaatggctattagctaaattcattagcggattat 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  43884993 tggacttatcaaatgctaataaaagtcttagatgatatagtggtttagttggtttgtgtaatgcctgttagctaaattcattagcggattat 43885084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 29157419 - 29157475
Alignment:
Q  55 taggtttcttcgaagacatttgaagcaactcactatttaataattgttttgttttat 111  Q
    ||||||||||||  |||||| |||||||||||| |||||||||||||||||||||||    
T  29157419 taggtttcttcggggacattggaagcaactcacaatttaataattgttttgttttat 29157475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 2596407 - 2596489
Alignment:
Q  29 tttatggccacttgatgtctttcttctaggtttcttcgaagacatttgaagcaactcactatttaataattgttttgttttat 111  Q
    ||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  2596407 tttatggccccttgatgtctttgttttaggtttcttcgaagacatttgaagcaactcacaatgtaataattgttttgttttat 2596489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 2581720 - 2581797
Alignment:
Q  30 ttatggccacttgatgtctttcttctaggtttcttcgaagacatttgaagcaactcactatttaataattgttttgtt 107  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  2581720 ttatggccccttaatgtctttcttttaggtttcttcgaagacatttgaagcaactcacaatttaataatttttttgtt 2581797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 226 - 321
Target Start/End: Original strand, 46770523 - 46770621
Alignment:
Q  226 tggaaattaacctttttagtattgacattgacactata---agtagttgaggaggggtaattggtaaatggtgatatggaaaacctgttcttagttgat 321  Q
    ||||||| ||| |||||||||| ||||||| || | ||   ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||    
T  46770523 tggaaatcaacatttttagtatagacattggcattgtactaagtagttgaggaggggtaattggtaaatgatgctatggaaaacctattcttagttgat 46770621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 19359602 - 19359646
Alignment:
Q  55 taggtttcttcgaagacatttgaagcaactcactatttaataatt 99  Q
    |||||||||| ||| |||||||||||||||||||| |||||||||    
T  19359602 taggtttctttgaaaacatttgaagcaactcactacttaataatt 19359646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University