View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9930_low_4 (Length: 469)
Name: NF9930_low_4
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9930_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 29797583 - 29797998
Alignment:
| Q |
1 |
tgttgtaacacaccacaccaaactgagacataatcagaggaactttcccaactgataagaagcaaaacagagtacaacacggagnnnnnnnn---cctac |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
29797583 |
tgttgtaacacaccacaccaaactgagacataatcagaggaactttcccaactgataagaagcaaaacagagtacaacacagagagaaaaaaaaacctac |
29797682 |
T |
|
| Q |
98 |
ttaaaaacggtgacaacgttgatacgtatgtacgtctagcaaatggggaatggagagccacatgcgtcagcaaccttgatggcattgggagagctaacaa |
197 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29797683 |
ttaaaaacggtgacaaggttgatacgtatgtacgtctagcaaatggggaatggagagccacatgcgtcagcaaccttgatggcattgggagagctaacaa |
29797782 |
T |
|
| Q |
198 |
gtttcttaaggttaggatctttcaaatattggcaaaggaaggcttttgttccttcagtttactgcaacaaattgcagagggagggttggatgaagtgata |
297 |
Q |
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| T |
29797783 |
gtttcttaaggttaggatctttcaaatattggcaaaggaaggcttttgttccttcagtttactgcaacaaattgcagaaggagggttggatgaagtgata |
29797882 |
T |
|
| Q |
298 |
acacttgcacatgcacttagttgtaatgcgttgcatg-ttattcccattgataactttgtctttgcaaggagtacaacaaccataatgcacaatgttaaa |
396 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29797883 |
acacttgcacatgcacttagttgtaatgcgttgcatgtttattcccattgataactttgtctttgcaaggagtacaacaaccataatgcacaatgttaaa |
29797982 |
T |
|
| Q |
397 |
catgacagcttcattt |
412 |
Q |
| |
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||||| | |||||||| |
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| T |
29797983 |
catgaaatcttcattt |
29797998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 49601087 - 49600695
Alignment:
| Q |
1 |
tgttgtaacacaccacaccaaactgagacataatcagaggaactttcccaactgataagaagcaaaacagagtacaacacggagnnnnnnnncctactta |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| |||||||||||| || | |
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| T |
49601087 |
tgttgtaacacaccacaccaaactgagacataaccagaggaactttccctattgataagaagcaaaatagagtacaacacaga----------------a |
49601004 |
T |
|
| Q |
101 |
aaaacggtgacaacgttgatacgtatgtacgtctagcaaatggggaatggagagccacatgcgtcagcaaccttgatggcattgggagagctaacaagtt |
200 |
Q |
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|||| ||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| |||||| || |
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| T |
49601003 |
aaaa--gtgacaaggttgatacttatgt--gtctagcaaatcgggaatggagagccacatgcatcagaaaccttgatggcattgggagagttaacaaatt |
49600908 |
T |
|
| Q |
201 |
tcttaaggttaggatctttcaaatattggcaaagg-aaggcttttgttccttcagtttactgcaacaaattgcagagggagggttggatgaagtgataac |
299 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| | |
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| T |
49600907 |
tcttaaggttaggatctttcaaatattggcaaaggcaaggcttttgttccttcagtttactgcaacaaattgcagaaggagggttggatgaaatgatggc |
49600808 |
T |
|
| Q |
300 |
acttgcacatgcacttagttgtaatgcgttgcatgttattcccattgataactttgtctttgcaaggagtacaacaaccataatgcacaatgttaaacat |
399 |
Q |
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| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||| || ||||||||||||||||| | || |
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| T |
49600807 |
atttgcacatgcacttagttgtaatgcgttgcatgttatttccattgataactctgtctttgcaagcagtacagtaagcataatgcacaatgttacatat |
49600708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 224 - 315
Target Start/End: Complemental strand, 4490064 - 4489973
Alignment:
| Q |
224 |
tattggcaaaggaaggcttttgttccttcagtttactgcaacaaattgcagagggagggttggatgaagtgataacacttgcacatgcactt |
315 |
Q |
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| T |
4490064 |
tattggcaaaggaaggctttcgctccttcagtttactgcaacaaattgcagaaggagggttggatgaagttatagcacttgcacatgcactt |
4489973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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