View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9930_low_5 (Length: 467)
Name: NF9930_low_5
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9930_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 34034441 - 34034010
Alignment:
| Q |
17 |
aaattttcccggatagaccttatcaaaagacaataattgagttctctccactcttcgatcgattgtcttagtggaatgttagacctcaagctagtatctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34034441 |
aaattttcccggatagaccttatcaaaagacaataattgagttctctccactcttcgatcgattgtcttagtggaatgttagaccttaagctagtatctt |
34034342 |
T |
|
| Q |
117 |
caagaacctcttgtgtttctggatctgttctgtttccatcataaaaccaactttcaatagctgatctctcacatgtagtgccagtggaaaggctaacagg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34034341 |
caagaacctcttgtgtttctggatctgttctgtttccatcataaaaccaactttcaatagctgatctctcacatgtagtgccagtggaaaggctaacagg |
34034242 |
T |
|
| Q |
217 |
atcaaccataacagctccgtttatgcggcaaaggaaagacttaagaggttggatatatttttcccttgaatcatatctctctatcacctgaaccctttca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34034241 |
atcaaccataacagctccgtttatgcggcaaaggaaagacttaagaggttggatatatttttcccttgaatcatatctctctatcacctgaaccctttca |
34034142 |
T |
|
| Q |
317 |
aagtattgattcttaacttcttcataatcccttgctgcatcggctctagaaagtaacttaatgatctgctccaagaaaacaaattcggctttttctttcc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34034141 |
aagtattgattcttaacttcttcataatcccttgctgcatcggctctagaaagtaacttaatgatctgctccaagaaaacaaattcggctttttctttcc |
34034042 |
T |
|
| Q |
417 |
tatttgcagcttcttctttttccttcctaatg |
448 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
34034041 |
tatttgcagcttcttctttttccttcctaatg |
34034010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 275 - 437
Target Start/End: Complemental strand, 15192071 - 15191911
Alignment:
| Q |
275 |
ttttcccttgaatcatatctctctatcacctgaa-ccctttcaaagtattgattcttaacttcttcataatcccttgctgcatcggctctagaaagtaac |
373 |
Q |
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|||||| | ||| |||||| |||||| ||||||| |||||| ||||||||| ||||||||||| |||||||||||| ||||| |||| ||| |||| | |
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| T |
15192071 |
ttttccttcgaaccatatcactctattacctgaaacccttttaaagtattgcttcttaacttc---ataatcccttgcagcatcagctcgagagagtagc |
15191975 |
T |
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| Q |
374 |
ttaatgatctgctccaagaaaacaaattcggctttttctttcctatttgcagcttcttcttttt |
437 |
Q |
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||||||||||||||| || | || ||| ||| |||||||||| || | |||||||| ||||| |
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| T |
15191974 |
aaaatgatctgctccaaaaatataacttctgctctttctttcctgttggtagcttcttattttt |
15191911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 408 - 448
Target Start/End: Complemental strand, 15210433 - 15210393
Alignment:
| Q |
408 |
tttctttcctatttgcagcttcttctttttccttcctaatg |
448 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||| |
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| T |
15210433 |
tttctttcctgtttgcagcttcttctttttcccacctaatg |
15210393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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