View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9930_low_8 (Length: 373)
Name: NF9930_low_8
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9930_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 43015847 - 43015730
Alignment:
| Q |
1 |
tcttttcagagttgcacaaatgtggaattatttctttggttcagtgtttgttcttgaacttgattctgctccatttttggattcaaaaccttttagtgct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43015847 |
tcttttcagagttgcacaaatgtggaattatttctttggttcagtgtttgttcttgaacttgattctgctccatttttggattcaaaaccttttagtact |
43015748 |
T |
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| Q |
101 |
atatacgtgaatgtattg |
118 |
Q |
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||||| |||||||||||| |
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| T |
43015747 |
atatatgtgaatgtattg |
43015730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 43016035 - 43015960
Alignment:
| Q |
1 |
tcttttcagagttgcacaaatgtggaattatttctttggttcagtgtttgttcttgaacttgattctgctccattt |
76 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43016035 |
tcttttcagagttgcacaaatgtggaattatttctttggttcagtgtttgttcttgaacttgattctgctccattt |
43015960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 43014570 - 43014524
Alignment:
| Q |
317 |
gtgagtgttgtttgctaaaatttttgtgatgaagtgttttgtccttt |
363 |
Q |
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| T |
43014570 |
gtgagtgttgtttgctaaaatttttgtgatgaagtgttttgtccttt |
43014524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 43015931 - 43015885
Alignment:
| Q |
28 |
ttatttctttggttcagtgtttgttcttgaacttgattctgctccat |
74 |
Q |
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| T |
43015931 |
ttatttctttggttcagtgtttgttcttgaacttgattctgctccat |
43015885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 23735592 - 23735469
Alignment:
| Q |
1 |
tcttttcagagttgcacaaatgtggaattatttctttggttcagtgtttgttcttgaacttgattctgc------------tccatttttggattcaaaa |
88 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23735592 |
tcttttcagagttgcacaaatgtggaattatttatttgattccgtgtttgttcttgaacttgattctgctcaatttttgtttccatttttggattcaaaa |
23735493 |
T |
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| Q |
89 |
ccttttagtgctatatacgtgaat |
112 |
Q |
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||||||||| |||||||||||||| |
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| T |
23735492 |
ccttttagtactatatacgtgaat |
23735469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 18309664 - 18309611
Alignment:
| Q |
231 |
atacttgttaattatgaatgcaatttttgtgatgaagttttttgtccatttgct |
284 |
Q |
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| T |
18309664 |
atacttgttaattatgaatgcaatttttgtgatgaagttttttgtccatttgct |
18309611 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 23735342 - 23735282
Alignment:
| Q |
225 |
tgaaggatacttgttaattatgaatg-caatttttgtgatgaagttttttgtccatttgct |
284 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23735342 |
tgaatgatacttgttaattatgaatgtcaatttttgtgatgaagttttttgtccatttgct |
23735282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 18223335 - 18223269
Alignment:
| Q |
3 |
ttttcagagttgcacaaatgtggaattatttctttggttcagtgtttgttcttgaacttgattctgc |
69 |
Q |
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| T |
18223335 |
ttttcagtgttgcacaaatttggaattttttctttggttcagtgtttgttgttcaacttgattctgc |
18223269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18309807 - 18309765
Alignment:
| Q |
1 |
tcttttcagagttgcacaaatgtggaattatttctttggttca |
43 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18309807 |
tcttttcagagttgcacaaatgtgaaattatttctttggttca |
18309765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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