View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9930_low_9 (Length: 361)
Name: NF9930_low_9
Description: NF9930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9930_low_9 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 45174739 - 45174379
Alignment:
| Q |
1 |
acccgtagagtttgagcacctgattatcagcgaaattgaaagccctttccatgctactaagacacctctcaactggataatcaccataacttccacacgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45174739 |
acccgtagagtttgagcacctgattatcagcgaaattgatagccctttccatgctactaagacacctctcaactggataatcaccataacttccacacgg |
45174640 |
T |
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| Q |
101 |
attacaacccacaaaatgagtcacaaacggccacctctcatcccctaaacccggatgatacttctcaatcatctcctcataccgatcaaccaacccagcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45174639 |
attacaacccacaaaatgagtcacaaacggccacctctcatcccctaaacccggatgatacttctcaatcatctcctcataccgatcaaccaacccagcc |
45174540 |
T |
|
| Q |
201 |
gtcaaaatcttccaggcctcttccctgacaggacctttcggacccataggagcccaaacatcaagcaaatccaaagaccattgacagttcctaaaaagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45174539 |
gtcaaaatcttccaggcctcttccctgacaggacctttcggacccataggagcccaaacatcaagcaaatccaaagaccattgacagttcctaaaaagaa |
45174440 |
T |
|
| Q |
301 |
aactaccagtattgatagcaatccatgacttctgctttctgtttattcattcacctatgta |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45174439 |
aactaccagtattgatagcaatccatgacttctgctttctgtttattcattcacctatgta |
45174379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 45169181 - 45168982
Alignment:
| Q |
1 |
acccgtagagtttgagcacctgattatcagcgaaattgaaagccctttccatgctactaagacacctctcaactggataatcaccataacttccacacgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45169181 |
acccgtagagtttgagcacctgattatcagcgaagttgaaagccctttccatgctactaagacacctctcaaccggataatcaccataacttccacacgg |
45169082 |
T |
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| Q |
101 |
attacaacccacaaaatgagtcacaaacggccacctctcatcccctaaacccggatgatacttctcaatcatctcctcataccgatcaaccaacccagcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45169081 |
cttacaacccacaaaatgagtcacaaacggccacctctcatcccctaaacccggatgatacttctcaatcatctcctcataccgatcaaccaacccagcc |
45168982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 197 - 336
Target Start/End: Complemental strand, 45168853 - 45168714
Alignment:
| Q |
197 |
agccgtcaaaatcttccaggcctcttccctgacaggacctttcggacccataggagcccaaacatcaagcaaatccaaagaccattgacagttcctaaaa |
296 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
45168853 |
agccgtcaaaatctttcccgcctcttccctgacaggacctttcggacccataggagcccaaacatcaagcaaatccaaagaccactgacaattcctaaaa |
45168754 |
T |
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| Q |
297 |
agaaaactaccagtattgatagcaatccatgacttctgct |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
45168753 |
agaaaactaccagtattgatagcaatccatgacttctgct |
45168714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 62 - 193
Target Start/End: Complemental strand, 49679601 - 49679470
Alignment:
| Q |
62 |
acacctctcaactggataatcaccataacttccacacggattacaacccacaaaatgagtcacaaacggccacctctcatcccctaaacccggatgatac |
161 |
Q |
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|||||||||||| || ||||||||| | | ||||| || ||||| |||||||||||||| |||| ||||| || | ||| || ||||| |||||||| |
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| T |
49679601 |
acacctctcaacagggtaatcaccaaatttcccacaaggtttacaccccacaaaatgagtaacaaggggccatctatgatcaccaaaaccaggatgataa |
49679502 |
T |
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| Q |
162 |
ttctcaatcatctcctcataccgatcaaccaa |
193 |
Q |
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|||||||||||||| ||||| | ||||||||| |
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| T |
49679501 |
ttctcaatcatctcttcatatctatcaaccaa |
49679470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 13713846 - 13714045
Alignment:
| Q |
1 |
acccgtagagtttgagcacctgattatcagcgaaattgaaagccctttccatgctactaagacacctctcaactggataatcaccataacttccacacgg |
100 |
Q |
| |
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|||| |||||||| ||||| |||||||| || ||||| |||||||| |||||||||||||| || ||||| ||||||||||| |||||||| ||||| || |
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| T |
13713846 |
acccatagagtttaagcacttgattatctgcaaaattaaaagccctctccatgctactaaggcatctctctactggataatctccataactcccacaagg |
13713945 |
T |
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| Q |
101 |
attacaacccacaaaatgagtcacaaacggccacctctcatcccctaaacccggatgatacttctcaatcatctcctcataccgatcaaccaacccagcc |
200 |
Q |
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||||| ||||| ||||| |||||||| ||||||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
13713946 |
cttacaccccacgaaatgcgtcacaaaaggccacctctcatccccaagccccggatgatacttctccatcatctcttcataccgatcaaccaacccagcc |
13714045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 280
Target Start/End: Original strand, 13714175 - 13714257
Alignment:
| Q |
198 |
gccgtcaaaatcttccaggcctcttccctgacaggacctttcggacccataggagcccaaacatcaagcaaatccaaagacca |
280 |
Q |
| |
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|||||||||||||||| ||||| || | || || ||||||||||||||||| |||||| |||||||||||||||| ||||| |
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| T |
13714175 |
gccgtcaaaatcttcccagcctcctctcggattgggcctttcggacccataggggcccaagcatcaagcaaatccaacgacca |
13714257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 20180934 - 20181034
Alignment:
| Q |
93 |
ccacacggattacaacccacaaaatgagtcacaaacggccacctctcatcccctaaacccggatgatacttctcaatcatctcctcataccgatcaacca |
192 |
Q |
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||||| || ||||| ||||||||||||||||| || |||||||| | ||| || ||||| |||||||| |||||||||||||||||||| | |||||||| |
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| T |
20180934 |
ccacaaggcttacaccccacaaaatgagtcaccaatggccacctatgatcaccaaaaccaggatgataattctcaatcatctcctcatatctatcaacca |
20181033 |
T |
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| Q |
193 |
a |
193 |
Q |
| |
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| |
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| T |
20181034 |
a |
20181034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 20181210 - 20181286
Alignment:
| Q |
237 |
ttcggacccataggagcccaaacatcaagcaaatccaaagaccattgacagttcctaaaaagaaaactaccagtatt |
313 |
Q |
| |
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||||| ||||| || |||||| ||||||| | |||||| ||||| ||||||||||| || | |||||| |||||||| |
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| T |
20181210 |
ttcggtcccattggtgcccaagcatcaagaatatccaatgaccactgacagttcctcaacaaaaaactcccagtatt |
20181286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 44268282 - 44268382
Alignment:
| Q |
93 |
ccacacggattacaacccacaaaatgagtcacaaacggccacctctcatcccctaaacccggatgatacttctcaatcatctcctcataccgatcaacca |
192 |
Q |
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||||| || ||||| ||||||||||||||||| || |||||||| | ||| || ||||| |||||||| |||||||||||||||||||| | |||||||| |
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| T |
44268282 |
ccacaaggcttacaccccacaaaatgagtcaccaatggccacctatgatcaccaaaaccaggatgataattctcaatcatctcctcatatctatcaacca |
44268381 |
T |
|
| Q |
193 |
a |
193 |
Q |
| |
|
| |
|
|
| T |
44268382 |
a |
44268382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 44268558 - 44268634
Alignment:
| Q |
237 |
ttcggacccataggagcccaaacatcaagcaaatccaaagaccattgacagttcctaaaaagaaaactaccagtatt |
313 |
Q |
| |
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||||| ||||| || |||||| ||||||| | |||||| ||||| ||||||||||| || | |||||| |||||||| |
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| T |
44268558 |
ttcggtcccattggtgcccaagcatcaagaatatccaatgaccactgacagttcctcaacaaaaaactcccagtatt |
44268634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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