View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9931_3 (Length: 386)
Name: NF9931_3
Description: NF9931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9931_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 11 - 386
Target Start/End: Original strand, 40635735 - 40636110
Alignment:
| Q |
11 |
agaatataatgaatttaaacttggatgttagtgtctctgttgaaactcccgttgtaagaggagaagcaccgccaccttcctgttccaccatcgtagaagt |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40635735 |
agaaaataatgaatttaaacttggatgttagtgtctctgttgaaactcccgttgtaagaggagaagcactgccaccttcctgttccaccatcgtagaagt |
40635834 |
T |
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| Q |
111 |
agctatggagaagcttgatcaaattcggagtcgtcaaaatttaataaccagtaataaggtgattgagatggtggaagaagtaaaagatgggctcaaagac |
210 |
Q |
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| T |
40635835 |
agctatggagaagcttgatcaaattcggagtcgtcaaaatttaataaccagtaataaggtgattgagatggtggaagaagtaaaagatgggctcaaagac |
40635934 |
T |
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| Q |
211 |
ctgaaaaacattgtgtctaaattgaagtcaacaaatcaaagagaaactgtgtggttggaagaggtgaacgaagtttgtaattactcggaaaaagttgctg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40635935 |
ctgaaaaacattgtgtctaaattgaagtcaacaaatcaaagagaaactgtgtggttggaagaggtgaacgaagtctgtaattactcggaaaaagttgctg |
40636034 |
T |
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| Q |
311 |
gaaatttcatttcaacaagagaaaaatggttgaaaatgtatggttggaagaaggtcctttatctttatgaaggata |
386 |
Q |
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| T |
40636035 |
gaaatttcatttcaacaagagaaaaatggttgaaaatgtatggttggaagaaggtcctttatctttatgaaggata |
40636110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 11 - 341
Target Start/End: Complemental strand, 40629400 - 40629067
Alignment:
| Q |
11 |
agaatataatgaatttaaacttggatgttagtgtctctgttgaaactcccgttgtaagaggagaagcaccgccaccttcctgttccaccatc---gtaga |
107 |
Q |
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|||| |||||||| ||||| |||||||||||| |||| ||||||||||| |||||| ||||||||||||| |||||||| ||| ||||| |||| |
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| T |
40629400 |
agaaaataatgaacttaaatttggatgttagtatctccgttgaaactccagttgtaggaggagaagcaccaacaccttccaattctgccatcatagtagt |
40629301 |
T |
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| Q |
108 |
agtagctatggagaagcttgatcaaattcggagtcgtcaaaatttaataaccagtaataaggtgattgagatggtggaagaagtaaaagatgggctcaaa |
207 |
Q |
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|||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
40629300 |
agtagctatggagaagcttgatcacattctgagatgtcaaaatttaataaccagtaataaggtgatcaagatggtggaggaagtaaaagatgggctcaaa |
40629201 |
T |
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| Q |
208 |
gacctgaaaaacattgtgtctaaattgaagtcaacaaatcaaagagaaactgtgtggttggaagaggtgaacgaagtttgtaattactcggaaaaagttg |
307 |
Q |
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|||||| |||| | ||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||| || | |||||| |
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| T |
40629200 |
gacctgcaaaatactgtgtctaaattgaagtcaacaaatgaaagagaaattgtgtggttggaacaggtgaacgaagtttgtgattacatggcagaagttg |
40629101 |
T |
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| Q |
308 |
ctggaaatttcatttcaacaagagaaaaatggtt |
341 |
Q |
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||| | |||||||| ||| ||||||||||||||| |
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| T |
40629100 |
ctgaagatttcattgcaagaagagaaaaatggtt |
40629067 |
T |
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