View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9931_6 (Length: 323)
Name: NF9931_6
Description: NF9931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9931_6 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 9195107 - 9194792
Alignment:
| Q |
1 |
agcatcatgtcctatgatcttcacatcaatctctaaagcaataagattcttactacaactaggtttgttttggtttaccacaattgaagttgtcgttgca |
100 |
Q |
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| T |
9195107 |
agcatcatgtcctatgatcttcacatcaatctctaaagcaataagattcttactacaactaggtttgttttggtctaccacaattgaagttgtcgttgca |
9195008 |
T |
|
| Q |
101 |
ctattattatcgacaattttcatcgttttcatcattgcttttttcgatcccttttgttgccctaattttaaatcttcaatctttgcttttaactcattga |
200 |
Q |
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| T |
9195007 |
ctattattatcgacaattttcatcgttttcatcatcgcctttttcgattccttttgttgccctaattttaaatcttcgatctttgcttttaactcattga |
9194908 |
T |
|
| Q |
201 |
tgtaatctactgcatcagataacaaagaagctttatccatctttgaaacgtttggaaccacagatcttaaagcatagaatctatggtttagtttatctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9194907 |
tgtaatctactgcatcagataacaaagaagctttatccatctttgaaacgtttggaaccacagatcttaaagcatagaatctatggtttagtttctctct |
9194808 |
T |
|
| Q |
301 |
cctttgtctctctgct |
316 |
Q |
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|||||||||||||||| |
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| T |
9194807 |
cctttgtctctctgct |
9194792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 68 - 316
Target Start/End: Original strand, 9212990 - 9213238
Alignment:
| Q |
68 |
ttttggtttaccacaattgaagttgtcgttgcactattattatcgacaattttcatcgttttcatcattgcttttttcgatcccttttgttgccctaatt |
167 |
Q |
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| T |
9212990 |
ttttggtctaccacagttgaagttgtcgttgcactgttattatcgacaatttccatcgtttccatcttcacctttttcgattccttttgttgcactgatt |
9213089 |
T |
|
| Q |
168 |
ttaaatcttcaatctttgcttttaactcattgatgtaatctactgcatcagataacaaagaagctttatccatctttgaaacgtttggaaccacagatct |
267 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9213090 |
ctaaatcttcaatctttgattttaactcattgatgtaatccactgcatctgataaaagagaagctttatccatctttgaaacatttggaaccacagatct |
9213189 |
T |
|
| Q |
268 |
taaagcatagaatctatggtttagtttatctctcctttgtctctctgct |
316 |
Q |
| |
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|||||| || ||||||||||||||||| ||||||||||||||||||||| |
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| T |
9213190 |
taaagcgtaaaatctatggtttagtttctctctcctttgtctctctgct |
9213238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 316
Target Start/End: Complemental strand, 28081217 - 28081131
Alignment:
| Q |
230 |
gctttatccatctttgaaacgtttggaaccacagatcttaaagcatagaatctatggtttagtttatctctcctttgtctctctgct |
316 |
Q |
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| T |
28081217 |
gctttgtccatcttagaaacatttggaaccacagcacgtagagcatagaatttttggttaagcttttctcttctttgtctctctgct |
28081131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 17371053 - 17370997
Alignment:
| Q |
151 |
cttttgttgccctaattttaaatcttcaatctttgcttttaactcattgatgtaatc |
207 |
Q |
| |
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| T |
17371053 |
cttttgttgcactaattctaaattttcaatctttgctttcaactcattgatgtaatc |
17370997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 24748802 - 24748746
Alignment:
| Q |
151 |
cttttgttgccctaattttaaatcttcaatctttgcttttaactcattgatgtaatc |
207 |
Q |
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|||||||||| || ||| ||||| ||||||||||||||| ||||||| ||||||||| |
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| T |
24748802 |
cttttgttgcactgattctaaattttcaatctttgctttcaactcatagatgtaatc |
24748746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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