View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9933_high_1 (Length: 321)

Name: NF9933_high_1
Description: NF9933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9933_high_1
NF9933_high_1
[»] chr2 (1 HSPs)
chr2 (16-309)||(43313808-43314100)


Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 43314100 - 43313808
Alignment:
Q  16 caaagacctgaactcaagaaaagggctcctcttgatgaaataatggccacaagaaatagcataagttgtgttagaatgcattggtaattcaatcaacatt 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43314100 caaagacctgacctcaagaaaagggctcctcttgatgaaataatggccacaagaaatagcataagttgtgttagaatgcattggtaattcaatcaacatt 43314001  T
Q  116 agttgtgttagaatgccttactttggaacttgtgtttcctcttgtgcttgcttacagcttatagccaatggaatatgatatccattttctatcttgtgcn 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  43314000 agttgtgttagaatgccttactttggaacttgtgtttcctcttgtgcttgcttacagcttatagccaatggaatatgatatccattttctatcttgtgc- 43313902  T
Q  216 nnnnnnnncattcaaatgatttacttctttcaaagaaattggttagtttatcaattttatggtacagatatggaaactaattgaaggatggtct 309  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43313901 ttttttttcattcaaatgatttacttctttcaaagaaattggttagtttatcaattttatggtacagatatggaaactaatcgaaggatggtct 43313808  T

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