View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9934_high_1 (Length: 297)
Name: NF9934_high_1
Description: NF9934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9934_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 48185282 - 48185457
Alignment:
| Q |
15 |
gacatcatccctatgaaatttgacctcatgtgttgttctcggattgccgagttttccgcaaagaaccaagtggtcaaaatcatattgccaaaggaattcc |
114 |
Q |
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| T |
48185282 |
gacatcatcc-tatgaaatttgacctcacatgttgttctcggattgccgagttttccgcaaagaaccaagtggtcaaaatcatattgccaaaggaactcc |
48185380 |
T |
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| Q |
115 |
ttgaaatctcgattaaggacctaaatatggtagacaatatacatatatacgattaaaagaagtattcaaaagataga |
191 |
Q |
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| T |
48185381 |
ttgaaatctcgattaaggacctgaatatggtagacaatatacatatatacgattaaaagaagtattcaaaagataga |
48185457 |
T |
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Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 66 - 254
Target Start/End: Complemental strand, 19341431 - 19341245
Alignment:
| Q |
66 |
ttttccgcaaagaaccaagtggtcaaaatcatattgccaaaggaattccttgaaatctcgattaaggacctaaatatggtagacaatatacatatatacg |
165 |
Q |
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| T |
19341431 |
ttttccgcataggaccaagtggttaaaatcatattgcgaaaggaagtctttgaaatctcgattaagcacgtaaacatgataggcaatgta--tatatacg |
19341334 |
T |
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| Q |
166 |
attaaaagaagtattcaaaagatagaaataaagcgatgataataattaatggtttgaagtatatactcaattaattgatgtggttcagc |
254 |
Q |
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| T |
19341333 |
gttaaaagaagtattcaaaggatagaaataaagtagtgacaataattaatagtatgaaatgtatactcaaccaattgatgtggttcagc |
19341245 |
T |
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