View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9934_high_2 (Length: 263)

Name: NF9934_high_2
Description: NF9934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9934_high_2
NF9934_high_2
[»] chr3 (32 HSPs)
chr3 (74-248)||(10431948-10432122)
chr3 (74-248)||(10262689-10262863)
chr3 (74-235)||(10090795-10090956)
chr3 (74-235)||(10197677-10197838)
chr3 (75-248)||(10361709-10361879)
chr3 (74-244)||(10128920-10129087)
chr3 (74-244)||(9840853-9841020)
chr3 (96-246)||(10033993-10034140)
chr3 (96-245)||(10373774-10373920)
chr3 (74-234)||(10582615-10582773)
chr3 (74-234)||(9851744-9851901)
chr3 (74-245)||(11779889-11780057)
chr3 (74-245)||(10519479-10519647)
chr3 (1-68)||(9851940-9852007)
chr3 (1-68)||(10519686-10519753)
chr3 (1-51)||(10034221-10034271)
chr3 (74-245)||(11771228-11771396)
chr3 (1-68)||(10431842-10431909)
chr3 (5-68)||(11771435-11771498)
chr3 (1-49)||(10582831-10582879)
chr3 (1-68)||(9841059-9841126)
chr3 (5-68)||(11779787-11779850)
chr3 (1-51)||(10129143-10129193)
chr3 (1-58)||(10373643-10373700)
chr3 (1-58)||(10262912-10262969)
chr3 (97-243)||(10079406-10079549)
chr3 (4-42)||(10361605-10361643)
chr3 (1-39)||(10665696-10665734)
chr3 (97-243)||(10186376-10186519)
chr3 (98-146)||(10665610-10665658)
chr3 (186-234)||(10665531-10665579)
chr3 (8-68)||(13853269-13853329)
[»] scaffold0083 (2 HSPs)
scaffold0083 (74-235)||(55509-55667)
scaffold0083 (1-51)||(55403-55453)
[»] chr8 (1 HSPs)
chr8 (103-232)||(11487042-11487168)
[»] chr2 (2 HSPs)
chr2 (74-220)||(26908907-26909050)
chr2 (8-68)||(26909089-26909149)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 10431948 - 10432122
Alignment:
Q  74 caatgacaattgggtccttccatcaagcccattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaa 173  Q
    ||||||||| | ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10431948 caatgacaaattggtccttccgtcaagcccattgatattaactttctttattgacgacaaccaatgcatagtgtttggctctgtttccagtagttgagaa 10432047  T
Q  174 caacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgt 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10432048 caacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcaggacaattatgt 10432122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 74 - 248
Target Start/End: Complemental strand, 10262863 - 10262689
Alignment:
Q  74 caatgacaattgggtccttccatcaagcccattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaa 173  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  10262863 caatgacaattgggtccttccatcaagcccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaa 10262764  T
Q  174 caacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgt 248  Q
    ||||||  |||  |||||||||||||||||||||| ||||||||||| ||| |||||||||| | ||||||||||    
T  10262763 caaccttttattacaatttcttctatgcaaggaagtttgctaggcaaatgttcccttagttctggacaattatgt 10262689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 74 - 235
Target Start/End: Complemental strand, 10090956 - 10090795
Alignment:
Q  74 caatgacaattgggtccttccatcaagcccattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaa 173  Q
    ||||||||||||||||||| || ||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  10090956 caatgacaattgggtcctttcaccaaacccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaa 10090857  T
Q  174 caacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttc 235  Q
    ||||||  |||  ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  10090856 caaccttttattacaatttcttttatgcaaggaaggttgctaggcaaatgtccccttagttc 10090795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 74 - 235
Target Start/End: Complemental strand, 10197838 - 10197677
Alignment:
Q  74 caatgacaattgggtccttccatcaagcccattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaa 173  Q
    ||||||||||||||||||| || ||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  10197838 caatgacaattgggtcctttcaccaaacccatcgatattaattttctttactgacgacaaccaatgcaaagtgtttggctctgtttccaatagatgagaa 10197739  T
Q  174 caacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttc 235  Q
    ||||||  |||  ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  10197738 caaccttttattacaatttcttttatgcaaggaaggttgctaggcaaatgtccccttagttc 10197677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 75 - 248
Target Start/End: Original strand, 10361709 - 10361879
Alignment:
Q  75 aatgacaattgggtccttccatcaagcccattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaac 174  Q
    |||||||||||||||||||||||||||||||  || ||||  || |||||||||||||||||||||| ||||   ||||||||||||||||| |||||||    
T  10361709 aatgacaattgggtccttccatcaagcccatcaatcttaaaattttttattgacgacaaccaatgcaaagtg---ggctctgtttccaatagatgagaac 10361805  T
Q  175 aacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattatgt 248  Q
    |||||  |||  |||||||||||||||||||||||||||| ||||| |||||||||||||| | ||||||||||    
T  10361806 aaccttgtattacaatttcttctatgcaaggaaggttgctcggcaaatgtccccttagttctggacaattatgt 10361879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 74 - 244
Target Start/End: Complemental strand, 10129087 - 10128920
Alignment:
Q  74 caatgacaattgggtccttccatcaagcccattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaa 173  Q
    ||||||||||||||  ||| || |||||||||||||||| ||||| |||||||| ||||||||||||| |||   |||   |||||||||||| ||||||    
T  10129087 caatgacaattgggaactttcaccaagcccattgatattcattttttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaa 10128991  T
Q  174 caacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaatt 244  Q
    |||||||||||  |||||||||||||| ||||||||||| | ||||| |||||||||||||| | ||||||    
T  10128990 caacctgatattacaatttcttctatggaaggaaggttggtgggcaaatgtccccttagttctggacaatt 10128920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 74 - 244
Target Start/End: Complemental strand, 9841020 - 9840853
Alignment:
Q  74 caatgacaattgggtccttccatcaagcccattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaa 173  Q
    ||||||||||||||  ||| || |||||||||||||||| ||||| |||||||| ||||||||||||| |||   |||   |||||||||||| ||||||    
T  9841020 caatgacaattgggaactttcaccaagcccattgatattcattttttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaa 9840924  T
Q  174 caacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaatt 244  Q
    |||||||||||  |||||| ||||||| ||||||||||| | ||||| | |||||||||||| | ||||||    
T  9840923 caacctgatattacaattttttctatggaaggaaggttggtgggcaaatatccccttagttctggacaatt 9840853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 10034140 - 10033993
Alignment:
Q  96 tcaagcccattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaacaacctgatatatcaatttctt 195  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||| |||   |||   |||||||||||| |||||||||||||||||  |||||| ||    
T  10034140 tcaagcccattgatattcattttttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttttt 10034044  T
Q  196 ctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaattat 246  Q
    ||||| ||||||||||| | ||||| |||||||||||||| | ||||||||    
T  10034043 ctatggaaggaaggttggtgggcaaatgtccccttagttctggacaattat 10033993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 245
Target Start/End: Original strand, 10373774 - 10373920
Alignment:
Q  96 tcaagcccattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaacaacctgatatatcaatttctt 195  Q
    ||||||||||||||||| ||||  |||||||| ||||||||||||| |||   |||   |||||||||||| |||||||||||||||||  |||||||||    
T  10373774 tcaagcccattgatattcatttcttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaacaacctgatattacaatttctt 10373870  T
Q  196 ctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaatta 245  Q
    ||||| ||||||||||| | ||||| |||||||||||||| | |||||||    
T  10373871 ctatggaaggaaggttggtgggcaaatgtccccttagttctggacaatta 10373920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 234
Target Start/End: Complemental strand, 10582773 - 10582615
Alignment:
Q  74 caatgacaattgggtccttccatcaagcccattgatattaattttcttt-attgacgacaaccaatgcatagtgtttggctctgtttccaatagttgaga 172  Q
    |||| |||||||||||||| || |||||||||  || |||||||| ||| ||||||||||||||||||| ||||   ||||||||||||||||| |||      
T  10582773 caataacaattgggtcctttcaccaagcccatcaatcttaatttttttttattgacgacaaccaatgcaaagtg---ggctctgtttccaatagatgaac 10582677  T
Q  173 acaacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagtt 234  Q
    |||||||  ||| ||||||||||||||||||||||| | ||||||||| |||||| ||||||    
T  10582676 acaaccttctatttcaatttcttctatgcaaggaagatggctaggcaaatgtccctttagtt 10582615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 74 - 234
Target Start/End: Complemental strand, 9851901 - 9851744
Alignment:
Q  74 caatgacaattgggtccttccatcaagcccattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaa 173  Q
    ||||||||||||||  ||| || |||||||||||||||| ||||| |||||||| ||||||||| ||| |||   |||   |||||||||||| ||||||    
T  9851901 caatgacaattgggaactttcaccaagcccattgatattcattttttttattgaagacaaccaacgcagagtagatgg---tgtttccaatagatgagaa 9851805  T
Q  174 caacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagtt 234  Q
    |||||||||||  |||||||||||||| ||||||||||| | ||||| | |||||||||||    
T  9851804 caacctgatattacaatttcttctatggaaggaaggttggtgggcaaatatccccttagtt 9851744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 245
Target Start/End: Original strand, 11779889 - 11780057
Alignment:
Q  74 caatgacaattgggtccttccatcaagcccattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaa 173  Q
    |||||||||||| ||| || || |||| || |||||||| ||||  |||||||||||||||||||||| |||   ||| |   |||||||||| ||||||    
T  11779889 caatgacaattgtgtcttttcaccaagtcctttgatattcatttcttttattgacgacaaccaatgcaaagtagatggtt---tttccaatagatgagaa 11779985  T
Q  174 caacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaatta 245  Q
    ||||||  |||  |||||||||| ||||||||||||||| ||||||| |||||||||||||||| |||||||    
T  11779986 caaccttttattacaatttcttcgatgcaaggaaggttggtaggcaaatgtccccttagttcaggacaatta 11780057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 74 - 245
Target Start/End: Complemental strand, 10519647 - 10519479
Alignment:
Q  74 caatgacaattgggtccttccatcaagcccattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaa 173  Q
    ||||||||||||||  ||| || |||||||||||||||| ||||| |||||||| ||||||||||||| |||   |||   |||||||||||| |||  |    
T  10519647 caatgacaattgggaactttcaccaagcccattgatattcattttttttattgaagacaaccaatgcaaagtagatgg---tgtttccaatagatgaaca 10519551  T
Q  174 caacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaatta 245  Q
    ||||||  |||  |||||||||||||| ||||||||||| | ||||| |||||||||||||| | |||||||    
T  10519550 caaccttttattacaatttcttctatggaaggaaggttggtgggcaaatgtccccttagttctggacaatta 10519479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 9852007 - 9851940
Alignment:
Q  1 agtgtgtaagacaagtgcttctcaaaatcaattttggcacagctaatagctcaacacactttttaatc 68  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  9852007 agtgtgtaagacaagtgcttctcataatcaattttggcacagctaatagcttaacacacttttcaatc 9851940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 10519753 - 10519686
Alignment:
Q  1 agtgtgtaagacaagtgcttctcaaaatcaattttggcacagctaatagctcaacacactttttaatc 68  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||    
T  10519753 agtgtgtaagacaagtgcttttcagaatcaattttggcacagctaatagcttaacacactttttaatc 10519686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10034271 - 10034221
Alignment:
Q  1 agtgtgtaagacaagtgcttctcaaaatcaattttggcacagctaatagct 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10034271 agtgtgtaagacaagtgcttctcaaaatcaattttggcacagctaatagct 10034221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 245
Target Start/End: Complemental strand, 11771396 - 11771228
Alignment:
Q  74 caatgacaattgggtccttccatcaagcccattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaa 173  Q
    ||||||||| || ||| || || |||| || |||||||| ||||  |||||||||||||||||||||| |||   ||| |   |||||||||| ||||||    
T  11771396 caatgacaactgtgtcttttcaccaaggccgttgatattcatttcttttattgacgacaaccaatgcaaagtagatggtt---tttccaatagatgagaa 11771300  T
Q  174 caacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttcagaacaatta 245  Q
    ||||||   ||  |||||||||| ||||||||||||||| |||| || ||| |||||||||||| |||||||    
T  11771299 caacctttgattacaatttcttcgatgcaaggaaggttggtaggaaaatgtacccttagttcaggacaatta 11771228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10431842 - 10431909
Alignment:
Q  1 agtgtgtaagacaagtgcttctcaaaatcaattttggcacagctaatagctcaacacactttttaatc 68  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||| |||| ||||    
T  10431842 agtgtgtaagacaagtgcttctcagaatcaattttggcacaactaatagcttaacacagttttcaatc 10431909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 11771498 - 11771435
Alignment:
Q  5 tgtaagacaagtgcttctcaaaatcaattttggcacagctaatagctcaacacactttttaatc 68  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||    
T  11771498 tgtaagacaagtgcttctcaaaatcaattttggcacaactgatagctcaacatacttttcaatc 11771435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10582879 - 10582831
Alignment:
Q  1 agtgtgtaagacaagtgcttctcaaaatcaattttggcacagctaatag 49  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10582879 agtgtgtaagacaagtgcttctcagaatcaattttggcacagctaatag 10582831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 9841126 - 9841059
Alignment:
Q  1 agtgtgtaagacaagtgcttctcaaaatcaattttggcacagctaatagctcaacacactttttaatc 68  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||||||| | ||||||||||| ||||    
T  9841126 agtgtgtaagacaagtgcttctcagaatcaattttggaacaactaatagtttaacacacttttcaatc 9841059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 11779787 - 11779850
Alignment:
Q  5 tgtaagacaagtgcttctcaaaatcaattttggcacagctaatagctcaacacactttttaatc 68  Q
    |||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||| ||||    
T  11779787 tgtaagacaaatgcttctcaaaatcaattttggcacaactgatagctcagcacacttttcaatc 11779850  T

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Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10129193 - 10129143
Alignment:
Q  1 agtgtgtaagacaagtgcttctcaaaatcaattttggcacagctaatagct 51  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  10129193 agtgtgtaagacaagtgcttttcagaatcaattttggcacagctaatagct 10129143  T

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Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 10373643 - 10373700
Alignment:
Q  1 agtgtgtaagacaagtgcttctcaaaatcaattttggcacagctaatagctcaacaca 58  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||| || ||||||    
T  10373643 agtgtgtaagacaagtgcttctcagaatcaattttggaacagctaataacttaacaca 10373700  T

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Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10262969 - 10262912
Alignment:
Q  1 agtgtgtaagacaagtgcttctcaaaatcaattttggcacagctaatagctcaacaca 58  Q
    ||||||| |||||||||||||||| |||||||||||| |||||||||| || ||||||    
T  10262969 agtgtgttagacaagtgcttctcagaatcaattttggaacagctaataacttaacaca 10262912  T

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Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 243
Target Start/End: Complemental strand, 10079549 - 10079406
Alignment:
Q  97 caagcccattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaacaacctgatatatcaatttcttc 196  Q
    |||| ||||||||||||||||| |||| ||||| |||||||| || |||   |||   |||||||||||| |  | |||||||  |||   |||||||||    
T  10079549 caagaccattgatattaattttttttactgacggcaaccaatccaaagtaggtgg---tgtttccaatagattcgcacaaccttttatcataatttcttc 10079453  T
Q  197 tatgcaaggaaggttgctaggcaattgtccccttagttcagaacaat 243  Q
    |||||||||||||| |||||| || || ||| ||||||||| |||||    
T  10079452 tatgcaaggaaggtcgctaggaaaatgcccctttagttcaggacaat 10079406  T

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Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 10361605 - 10361643
Alignment:
Q  4 gtgtaagacaagtgcttctcaaaatcaattttggcacag 42  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  10361605 gtgtaagacaagtgcttctcagaatcaattttggcacag 10361643  T

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Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 10665734 - 10665696
Alignment:
Q  1 agtgtgtaagacaagtgcttctcaaaatcaattttggca 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  10665734 agtgtgtaagacaagtgcttctcataatcaattttggca 10665696  T

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Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 243
Target Start/End: Complemental strand, 10186519 - 10186376
Alignment:
Q  97 caagcccattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaacaacctgatatatcaatttcttc 196  Q
    |||| ||||||||||||||||| |||| ||||| |||||||| || |||   |||   ||| |||||||| |  | |||||||  |||   |||||||||    
T  10186519 caagaccattgatattaattttttttactgacggcaaccaatccaaagtaggtgg---tgtatccaatagattcgcacaaccttttatcataatttcttc 10186423  T
Q  197 tatgcaaggaaggttgctaggcaattgtccccttagttcagaacaat 243  Q
    ||||||||||||||  |||||||| || ||| ||||||||| |||||    
T  10186422 tatgcaaggaaggtcactaggcaaatgcccctttagttcaggacaat 10186376  T

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Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 10665658 - 10665610
Alignment:
Q  98 aagcccattgatattaattttctttattgacgacaaccaatgcatagtg 146  Q
    |||||||||||| |||| ||| |||||||||||||||||||||| ||||    
T  10665658 aagcccattgattttaactttttttattgacgacaaccaatgcaaagtg 10665610  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 10665579 - 10665531
Alignment:
Q  186 tcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagtt 234  Q
    |||||||||||||| |||||||| | ||||||||| |||||| ||||||    
T  10665579 tcaatttcttctatacaaggaagatggctaggcaaatgtccctttagtt 10665531  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 13853269 - 13853329
Alignment:
Q  8 aagacaagtgcttctcaaaatcaattttggcacagctaatagctcaacacactttttaatc 68  Q
    |||| ||||||||||||||||||||||||||| || | | |||  ||||||||||| ||||    
T  13853269 aagaaaagtgcttctcaaaatcaattttggcatagatgacagcataacacacttttcaatc 13853329  T

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Target: scaffold0083 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 74 - 235
Target Start/End: Original strand, 55509 - 55667
Alignment:
Q  74 caatgacaattgggtccttccatcaagcccattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaa 173  Q
    ||||||||||||||  ||| || |||||||||||||||| ||| | |||||||| ||||||||||||| |||   |||   |||||||||||| ||||||    
T  55509 caatgacaattgggaactttcaccaagcccattgatattcattatttttattgaagacaaccaatgcagagtagatgg---tgtttccaatagatgagaa 55605  T
Q  174 caacctgatatatcaatttcttctatgcaaggaaggttgctaggcaattgtccccttagttc 235  Q
    |||||||||||  |||||||||||||| ||||||||||| | ||||| ||||||||||||||    
T  55606 caacctgatattacaatttcttctatggaaggaaggttggtgggcaaatgtccccttagttc 55667  T

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Target: scaffold0083; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 55403 - 55453
Alignment:
Q  1 agtgtgtaagacaagtgcttctcaaaatcaattttggcacagctaatagct 51  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  55403 agtgtgtaagacaagtgcttttcagaatcaattttggcacagctaatagct 55453  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 103 - 232
Target Start/End: Complemental strand, 11487168 - 11487042
Alignment:
Q  103 cattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaacaacctgatatatcaatttcttctatgca 202  Q
    ||||||||| |||||| |||||||||||||||||||||| ||    |||   ||||||||| || || | |||||||| ||||| ||||| |||||||||    
T  11487168 cattgatatcaattttttttattgacgacaaccaatgcaaagcagatgg---tgtttccaaaagatgggcacaacctgttatattaattttttctatgca 11487072  T
Q  203 aggaaggttgctaggcaattgtccccttag 232  Q
    |||||||| ||||||||| |||||||||||    
T  11487071 aggaaggtggctaggcaaatgtccccttag 11487042  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 220
Target Start/End: Complemental strand, 26909050 - 26908907
Alignment:
Q  74 caatgacaattgggtccttccatcaagcccattgatattaattttctttattgacgacaaccaatgcatagtgtttggctctgtttccaatagttgagaa 173  Q
    ||||||||||  |||||||  | ||||||||| |||||||||||||  ||| ||||||| |||||| | |||   |||   |||||||||||| ||| |     
T  26909050 caatgacaatatggtccttttaccaagcccatggatattaattttcggtatggacgacacccaatgtaaagtagatgg---tgtttccaatagatgatag 26908954  T
Q  174 caacctgatatatcaatttcttctatgcaaggaaggttgctaggcaa 220  Q
    ||||||  |||  ||||||||||||||||||||||||||||||||||    
T  26908953 caaccttttattacaatttcttctatgcaaggaaggttgctaggcaa 26908907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 26909149 - 26909089
Alignment:
Q  8 aagacaagtgcttctcaaaatcaattttggcacagctaatagctcaacacactttttaatc 68  Q
    |||||| |||||||||| |||||||||||||| | |||||||| ||||||| |||| ||||    
T  26909149 aagacatgtgcttctcagaatcaattttggcaaacctaatagcccaacacaattttgaatc 26909089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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