View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9934_low_1 (Length: 393)
Name: NF9934_low_1
Description: NF9934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9934_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 44377702 - 44378070
Alignment:
| Q |
19 |
caggtttgactctatccgtcgtatcatgacgagaacccatcatcatcatcatcctaaactcttcaaaatcaattgttccatcaccgtcgctatcaacacc |
118 |
Q |
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| T |
44377702 |
caggtttgactctatccgtcgtatcatgacgagaacccatcatcatcatcatcctaaactcttcaaaatcaattgttccatcaccgtcgctatcaacacc |
44377801 |
T |
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| Q |
119 |
tccgatcattttccggcactccgccaacgagcattcttccccaaggcttctcataaccgtattaagctcttccgccgtaatcgaaccattcccatccata |
218 |
Q |
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| T |
44377802 |
tccgatcattttccggcactccgccaacgagcattcttccccaaggcttctcataaccgtattaagctcttccgccgtaatcgaaccattcccatccata |
44377901 |
T |
|
| Q |
219 |
tcaaaaacagcaaaagcatccttcaaattctccaagatctcgtcggaatcaacgcctttggtgttgagttcgatgaattcttgtaaactaatgcaaccgt |
318 |
Q |
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| T |
44377902 |
tcaaaaacagcaaaagcatccttcaaattctccaagatctcgtcggaatcaacgcctttggtgttgagttcgatgaattcttgtaaactaatgcaaccgt |
44378001 |
T |
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| Q |
319 |
cgccatctccgtcgacttcacggatcatgttgttgagttcttgttctgatgtttgttgacctatgcttc |
387 |
Q |
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| T |
44378002 |
cgccgtctccgtcgacttcacggatcatgttgttgagttcttgttctgatgtttgttgacctaagcttc |
44378070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 11350177 - 11350233
Alignment:
| Q |
59 |
catcatcatcatcctaaactcttcaaaatcaattgttccatcaccgtcgctatcaac |
115 |
Q |
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| T |
11350177 |
catcatcatcttcttaaactcttcaaaatcgatcattccatcaccatcgctatcaac |
11350233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 37655360 - 37655427
Alignment:
| Q |
48 |
cgagaacccatcatcatcatcatcctaaactcttcaaaatcaattgttccatcaccgtcgctatcaac |
115 |
Q |
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| T |
37655360 |
cgagaacccatcatcatcatgattctaaaatcctcaaaatcaatcctaccatcaccatcactatcaac |
37655427 |
T |
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