View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9934_low_5 (Length: 231)
Name: NF9934_low_5
Description: NF9934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9934_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 26610558 - 26610361
Alignment:
| Q |
16 |
ggtgttcatttccgtatttgtattctatagttgatttatgttcggacgtgcgtagtcacatggtatatgtttcgaaattgaaattgacgttcatttaaat |
115 |
Q |
| |
|
||||| |||||| |||| |||| |||||||||||||| |||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
26610558 |
ggtgtccatttcagtatatgtactctatagttgatttcggttcagatgtgcgtagtcacatggtatatatttcggaattgaaattgacgttcatttaaat |
26610459 |
T |
|
| Q |
116 |
cattctaaagcgatttttatcgcaattttatcaaagctacaaaatatagcttcaattctaaaatgtgtccaacaatatattcaccgtgaagacaaaca |
213 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26610458 |
cattctaaagcgaatttcgttgcaattttatcaaagctacaaaatatagcttcaattctaaaatgtgtccaataatatattcaccgtgaagacaaaca |
26610361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University