View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9935_high_19 (Length: 308)

Name: NF9935_high_19
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9935_high_19
NF9935_high_19
[»] chr5 (4 HSPs)
chr5 (7-162)||(3618739-3618894)
chr5 (193-298)||(3618895-3619000)
chr5 (212-296)||(7907930-7908015)
chr5 (207-272)||(13244483-13244548)
[»] scaffold0311 (1 HSPs)
scaffold0311 (217-296)||(10559-10638)
[»] chr3 (6 HSPs)
chr3 (217-296)||(27016392-27016470)
chr3 (202-272)||(26330250-26330320)
chr3 (193-250)||(30657381-30657438)
chr3 (202-250)||(20210855-20210903)
chr3 (206-250)||(41033187-41033231)
chr3 (193-249)||(44237513-44237569)
[»] chr4 (6 HSPs)
chr4 (206-296)||(2841675-2841765)
chr4 (235-296)||(9843213-9843274)
chr4 (212-277)||(18628490-18628555)
chr4 (207-288)||(46187841-46187922)
chr4 (202-250)||(22523775-22523823)
chr4 (256-296)||(27970107-27970147)
[»] scaffold0426 (1 HSPs)
scaffold0426 (212-281)||(4280-4349)
[»] chr2 (2 HSPs)
chr2 (207-280)||(40943978-40944051)
chr2 (193-289)||(6561393-6561489)
[»] scaffold0141 (1 HSPs)
scaffold0141 (202-250)||(9705-9753)
[»] chr6 (5 HSPs)
chr6 (216-296)||(10031781-10031861)
chr6 (206-289)||(27857414-27857497)
chr6 (193-251)||(7351589-7351647)
chr6 (259-296)||(20377904-20377941)
chr6 (256-297)||(31839268-31839309)
[»] chr1 (1 HSPs)
chr1 (202-296)||(4868449-4868542)
[»] chr8 (1 HSPs)
chr8 (259-296)||(27119913-27119950)
[»] chr7 (1 HSPs)
chr7 (217-289)||(23214911-23214983)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 3618739 - 3618894
Alignment:
Q  7 tgtactgtgctcatagttatttgggtgggggttttgtaatcatatttatgtatcttttgttagacatacccggaagcttctcttcaattatagactccaa 106  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3618739 tgtactgtgctcatagttatttgggtgggggttttgtcatcatatttatgtatcttttgttagacatacccggaagcttctcttcaattatagactccaa 3618838  T
Q  107 tgttagaggaggaatttgtttctttgtacaatagttatccactattattaattgac 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3618839 tgttagaggaggaatttgtttctttgtacaatagttatccactattattaattgac 3618894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 193 - 298
Target Start/End: Original strand, 3618895 - 3619000
Alignment:
Q  193 ctgtttaacttgatttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataagttg 292  Q
    |||||||||||||||||||||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  3618895 ctgtttaacttgatttatctgagtttatctgctaacataaaaacttgtgagactgtttacaaaagtttatgaaaacaactaacgacatatctataagtag 3618994  T
Q  293 tttttg 298  Q
    ||||||    
T  3618995 tttttg 3619000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 296
Target Start/End: Complemental strand, 7908015 - 7907930
Alignment:
Q  212 tgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaac-taatgacatatctataagttgtttt 296  Q
    |||||||||||| | ||||||| ||||||||||||||||  || |  ||||||||||||| || ||| ||||  ||||||||||||    
T  7908015 tgagtttatctaataacataaacacttatgagactgtttggaagaacttatgaaaacaacgtactgaaatattcataagttgtttt 7907930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 13244483 - 13244548
Alignment:
Q  207 ttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaact 272  Q
    |||| |||||||||||| ||| ||||| |||||||| |||||||  || || ||||||||||||||    
T  13244483 ttatttgagtttatctattgaaataaacacttatgacactgtttggaagagcttatgaaaacaact 13244548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 10559 - 10638
Alignment:
Q  217 ttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataagttgtttt 296  Q
    |||| |||||||||||  |||| |||||||||||   |||| ||||| |||||||||||||||| || ||||||||||||    
T  10559 ttatgtactgacataagtacttgtgagactgtttgacaaagcttatgtaaacaactaatgacatgtccataagttgtttt 10638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 27016392 - 27016470
Alignment:
Q  217 ttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataagttgtttt 296  Q
    ||||||||||| ||||  ||||||||||||||||  || |||||||| ||||| || ||||||||||||||| |||||||    
T  27016392 ttatctactga-ataagtacttatgagactgtttcaaagagtttatggaaacagctcatgacatatctataacttgtttt 27016470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 26330250 - 26330320
Alignment:
Q  202 ttgatttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaact 272  Q
    ||||||||| |||| ||||||||||| ||||  | || |||||||||||| || || ||||||||||||||    
T  26330250 ttgatttatttgaggttatctactgaaataagtatttgtgagactgtttagaagagcttatgaaaacaact 26330320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 30657438 - 30657381
Alignment:
Q  193 ctgtttaacttgatttatctgagtttatctactgacataaagacttatgagactgttt 250  Q
    |||||| | ||||||||| |||||||||||||||||||||  |||| ||||| |||||    
T  30657438 ctgtttgaattgatttatttgagtttatctactgacataagcacttttgagattgttt 30657381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 20210855 - 20210903
Alignment:
Q  202 ttgatttatctgagtttatctactgacataaagacttatgagactgttt 250  Q
    ||||||||| |||| ||||||||||||||||  |||| |||||||||||    
T  20210855 ttgatttatttgaggttatctactgacataaccacttgtgagactgttt 20210903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 41033187 - 41033231
Alignment:
Q  206 tttatctgagtttatctactgacataaagacttatgagactgttt 250  Q
    ||||| ||||||||||||||||||||| ||||  |||||||||||    
T  41033187 tttatttgagtttatctactgacataaggactcgtgagactgttt 41033231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 44237569 - 44237513
Alignment:
Q  193 ctgtttaacttgatttatctgagtttatctactgacataaagacttatgagactgtt 249  Q
    |||||||| ||| ||||| |||||||||||||||||||||  |||| ||| ||||||    
T  44237569 ctgtttaaattggtttatttgagtttatctactgacataagcacttgtgaaactgtt 44237513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 296
Target Start/End: Complemental strand, 2841765 - 2841675
Alignment:
Q  206 tttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataagttgtttt 296  Q
    ||||| |||||||||| | ||||||||| |||  ||||| ||||| | | ||||||||||| ||||| ||||||| || ||||||||||||    
T  2841765 tttatttgagtttatccattgacataaaaactcgtgagattgtttgcgagagtttatgaaagcaacttatgacatgtcaataagttgtttt 2841675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 9843213 - 9843274
Alignment:
Q  235 acttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataagttgtttt 296  Q
    |||| |||||||||||  || || ||| ||||||||||||| ||||||| ||||||||||||    
T  9843213 acttgtgagactgtttcaaagagattaagaaaacaactaatcacatatccataagttgtttt 9843274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 18628490 - 18628555
Alignment:
Q  212 tgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatga 277  Q
    |||| ||||||||||||||||| |||| |||||||||||   | || |||||||||||||| ||||    
T  18628490 tgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttatga 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 46187841 - 46187922
Alignment:
Q  207 ttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataa 288  Q
    |||| |||| |||||||||| |||||| |||||||||||||||||  |  ||||||| |||||| | |||| || |||||||    
T  46187841 ttatttgagcttatctactggcataaacacttatgagactgtttaagagggtttatggaaacaatttatgatatgtctataa 46187922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 22523823 - 22523775
Alignment:
Q  202 ttgatttatctgagtttatctactgacataaagacttatgagactgttt 250  Q
    |||||||||  ||||||||||||||||||||  |||| |||||||||||    
T  22523823 ttgatttattcgagtttatctactgacataagtacttgtgagactgttt 22523775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 27970147 - 27970107
Alignment:
Q  256 agtttatgaaaacaactaatgacatatctataagttgtttt 296  Q
    ||||||||||||||||| ||||||| |||||||| ||||||    
T  27970147 agtttatgaaaacaacttatgacatgtctataagctgtttt 27970107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 4349 - 4280
Alignment:
Q  212 tgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacata 281  Q
    |||||||||||||||| | ||| | || |||||||||||  ||||||||||| |||||||| ||||||||    
T  4349 tgagtttatctactgataaaaatatttgtgagactgtttgaaaaagtttatggaaacaacttatgacata 4280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 280
Target Start/End: Complemental strand, 40944051 - 40943978
Alignment:
Q  207 ttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacat 280  Q
    |||| |||||||||||| ||||||||  |||| ||| |||||||  ||||||||||||||||| || |||||||    
T  40944051 ttatttgagtttatctaatgacataagcacttgtgaaactgtttggaaaagtttatgaaaacagcttatgacat 40943978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 289
Target Start/End: Complemental strand, 6561489 - 6561393
Alignment:
Q  193 ctgtttaacttgatttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataag 289  Q
    |||||| | |||| |||| ||||||||||||| | ||||||  ||| || ||| ||| | || || ||||| |||||||| ||||||||||||||||    
T  6561489 ctgtttgaattgacttatttgagtttatctacgggcataaacgcttctgtgaccgttcaaaagagcttatggaaacaacttatgacatatctataag 6561393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 9705 - 9753
Alignment:
Q  202 ttgatttatctgagtttatctactgacataaagacttatgagactgttt 250  Q
    ||||||||| |||||||||||||| ||||||| |||| |||||||||||    
T  9705 ttgatttatttgagtttatctactaacataaatacttgtgagactgttt 9753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 296
Target Start/End: Complemental strand, 10031861 - 10031781
Alignment:
Q  216 tttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataagttgtttt 296  Q
    |||||||||||||||||  |||| |||||||||||  || ||  ||||||| ||||| | |||||||| ||||||||||||    
T  10031861 tttatctactgacataagcacttgtgagactgtttgaaagagcctatgaaaccaacttacgacatatccataagttgtttt 10031781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 27857497 - 27857414
Alignment:
Q  206 tttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataag 289  Q
    ||||| |||||||||||||||||||| | |||| ||| |||||||   | || |||||||||||||| ||||||| || |||||    
T  27857497 tttatttgagtttatctactgacatagacacttgtgaaactgtttgggagagcttatgaaaacaacttatgacatctccataag 27857414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 7351589 - 7351647
Alignment:
Q  193 ctgtttaacttgatttatctgagtttatctactgacataaagacttatgagactgttta 251  Q
    |||||||| |||| |||| |||||||||||||||||||||  |||| ||||| ||||||    
T  7351589 ctgtttaaattgacttatttgagtttatctactgacataagcacttgtgagattgttta 7351647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 20377904 - 20377941
Alignment:
Q  259 ttatgaaaacaactaatgacatatctataagttgtttt 296  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  20377904 ttatgaaaacaacttatgacatgtctataagttgtttt 20377941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 297
Target Start/End: Complemental strand, 31839309 - 31839268
Alignment:
Q  256 agtttatgaaaacaactaatgacatatctataagttgttttt 297  Q
    ||||||||| ||||||| |||||||||||||||||| |||||    
T  31839309 agtttatgataacaacttatgacatatctataagtttttttt 31839268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 4868542 - 4868449
Alignment:
Q  202 ttgatttatctgagtttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataagttgtttt 296  Q
    ||||||||| ||| |||||||| |||||||   |||| |||||||||||   | |||||||| |||||||| ||||||| || ||||||||||||    
T  4868542 ttgatttatttgaatttatctattgacataggcacttgtgagactgtttgagagagtttatg-aaacaacttatgacatgtcaataagttgtttt 4868449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 27119913 - 27119950
Alignment:
Q  259 ttatgaaaacaactaatgacatatctataagttgtttt 296  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  27119913 ttatgaaaaccactaatgacatgtctataagttgtttt 27119950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 289
Target Start/End: Complemental strand, 23214983 - 23214911
Alignment:
Q  217 ttatctactgacataaagacttatgagactgtttacaaaagtttatgaaaacaactaatgacatatctataag 289  Q
    |||||||||  |||||| ||||||||||||||||   | | ||||||||||||||| ||||||| || |||||    
T  23214983 ttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatgacatttccataag 23214911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University