View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9935_high_20 (Length: 293)

Name: NF9935_high_20
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9935_high_20
NF9935_high_20
[»] chr8 (8 HSPs)
chr8 (51-228)||(31183037-31183216)
chr8 (14-240)||(44316143-44316374)
chr8 (46-274)||(29278298-29278532)
chr8 (113-274)||(21256532-21256696)
chr8 (55-279)||(38677817-38678041)
chr8 (222-274)||(9032637-9032689)
chr8 (143-174)||(38641604-38641635)
chr8 (143-174)||(43657165-43657196)
[»] scaffold0086 (1 HSPs)
scaffold0086 (14-240)||(37997-38228)
[»] chr6 (7 HSPs)
chr6 (51-228)||(34234706-34234885)
chr6 (14-240)||(14922613-14922844)
chr6 (14-172)||(34096675-34096837)
chr6 (51-221)||(6950442-6950612)
chr6 (51-219)||(24042271-24042439)
chr6 (61-230)||(15516238-15516408)
chr6 (47-96)||(19975539-19975588)
[»] chr4 (7 HSPs)
chr4 (113-274)||(6685344-6685507)
chr4 (41-272)||(6661022-6661259)
chr4 (51-174)||(6668548-6668670)
chr4 (51-174)||(43291304-43291426)
chr4 (143-174)||(8989815-8989846)
chr4 (205-267)||(56417459-56417520)
chr4 (145-190)||(572521-572568)
[»] chr7 (5 HSPs)
chr7 (113-274)||(2434083-2434246)
chr7 (51-222)||(32353103-32353274)
chr7 (51-174)||(39426924-39427046)
chr7 (51-174)||(31207338-31207460)
chr7 (143-174)||(32354590-32354621)
[»] chr2 (5 HSPs)
chr2 (14-274)||(19436221-19436486)
chr2 (51-174)||(10938743-10938865)
chr2 (51-174)||(10944605-10944727)
chr2 (51-174)||(26969661-26969783)
chr2 (143-172)||(14632156-14632185)
[»] scaffold0014 (1 HSPs)
scaffold0014 (51-201)||(86272-86424)
[»] chr5 (4 HSPs)
chr5 (113-240)||(25635838-25635967)
chr5 (16-107)||(26707931-26708022)
chr5 (16-107)||(26977665-26977756)
chr5 (143-174)||(26052627-26052658)
[»] chr3 (8 HSPs)
chr3 (51-156)||(16357163-16357268)
chr3 (51-228)||(11634925-11635102)
chr3 (51-174)||(53727480-53727602)
chr3 (150-274)||(16363776-16363906)
chr3 (51-129)||(19930864-19930942)
chr3 (51-129)||(42254385-42254463)
chr3 (51-130)||(14657385-14657464)
chr3 (143-174)||(32895395-32895426)
[»] chr1 (5 HSPs)
chr1 (194-274)||(49873935-49874015)
chr1 (51-174)||(49388230-49388352)
chr1 (51-174)||(1968093-1968215)
chr1 (51-172)||(38826148-38826265)
chr1 (143-174)||(24172375-24172406)
[»] scaffold0028 (1 HSPs)
scaffold0028 (79-174)||(127018-127112)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 51 - 228
Target Start/End: Complemental strand, 31183216 - 31183037
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||| | ||||  ||||||||||| ||||||||||||||||| ||||||||||||    
T  31183216 acacccccacaattcttgctgttacgcggttgtgcgcgaataggccatgcgcgtgcctggtattcatgagtgctctagagattttgccaagatctcatgc 31183117  T
Q  151 aagcggccccacttgacactc--atagatgatttcatcaagtatttgctgcaaatcatacaccacccataagggatatga 228  Q
    |||||||||||||||||||||  ||||  ||||||||||||| | |||||||| ||||||||||||||||||||||||||    
T  31183116 aagcggccccacttgacactcatataggcgatttcatcaagtgtatgctgcaagtcatacaccacccataagggatatga 31183037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 44316374 - 44316143
Alignment:
Q  14 agacacttgtgaatgttagaggtcaatcacttgcatcacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccatgtgtgtgcgcgg-- 110  Q
    ||||||||||| |||||||||||| |||||  ||||| |||||||||||||||||| |||  ||| || |||||| |||||||| || | ||||  ||      
T  44316374 agacacttgtgtatgttagaggtctatcacccgcatcgcacccccacaattcttgtcgttggcgctgtggtgcgcaaataggccgtgcgcgtgcttggat 44316275  T
Q  111 tattcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatac 208  Q
    | ||||||| |||||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||||||||||| | |||||||||||||||    
T  44316274 ttttcatgagtgctctagagatttcgccaatatctcatgcaagcggccccacttgacactcacataggtgatttcatcaagtgtatgctgcaaatcatac 44316175  T
Q  209 accacccataagggatatgaaattcattaaaa 240  Q
    ||||| ||||||||||||||||||||||||||    
T  44316174 accactcataagggatatgaaattcattaaaa 44316143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 46 - 274
Target Start/End: Complemental strand, 29278532 - 29278298
Alignment:
Q  46 gcatcacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccatgtgtgtgcgcgg--tatt-catgaatgctctagagattttgcaaag 141  Q
    |||||||||||||||||||||||| |||  ||| || ||| ||||||||||| || | ||||  ||  |||| ||||| ||| |||||||||| || |||    
T  29278532 gcatcacacccccacaattcttgtcgttggcgctgtggtgtgctaataggccgtgcgcgtgcctggattatttcatgagtgcactagagatttcgccaag 29278433  T
Q  142 atctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatacaccacccataagggatatgaaattcattaaa 239  Q
    ||| ||| |||||||||||||||||||||||  |||  ||||||||||||| | ||||||||||||||||||||||| |||||||||||| |||||||||    
T  29278432 atcccatacaagcggccccacttgacactcacataggagatttcatcaagtgtatgctgcaaatcatacaccacccacaagggatatgaagttcattaaa 29278333  T
Q  240 aactttatatgcttatgctctcaataatgcagtgt 274  Q
    | |||| |  |||||| ||||| ||||||||||||    
T  29278332 agctttgttggcttatcctctctataatgcagtgt 29278298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 113 - 274
Target Start/End: Original strand, 21256532 - 21256696
Alignment:
Q  113 ttcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatacac 210  Q
    ||||||| ||||| ||||| || || |||||||||| ||||||||||||||||||| |||  ||| |||||||||||||| | || ||||||||||||||    
T  21256532 ttcatgagtgctcaagagagttcgccaagatctcatacaagcggccccacttgacattcacataggtgatttcatcaagtgtatgttgcaaatcatacac 21256631  T
Q  211 cacccataagggatatgaaattcattaaaaactttatatgcttat-gctctcaataatgcagtgt 274  Q
    |||||||||| ||||||||||||||||||| ||||||| ||||||  || |||||||||||||||    
T  21256632 cacccataagagatatgaaattcattaaaagctttataggcttatccctttcaataatgcagtgt 21256696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 55 - 279
Target Start/End: Complemental strand, 38678041 - 38677817
Alignment:
Q  55 ccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgcaagc 154  Q
    |||||||||||||| ||||||||||||||||| ||||||||| || | ||||  ||||||| ||| |||||||||||  | || | | ||||||||||||    
T  38678041 ccccacaattcttgctgttacgcggttgtgcgttaataggccgtgcgcgtgcttggtattcgtgagtgctctagagacct-gccacggtctcatgcaagc 38677943  T
Q  155 ggccccacttgacactcatagatg--atttcatcaagtatttgctgcaaatcatacaccacccataagggatatgaaattcattaaaaactttatatgct 252  Q
    ||||||||| ||||| |||| | |  |||||||||||| | | |||||| |||||||||||||||||||||||||| | || || ||| | ||||| | |    
T  38677942 ggccccactcgacacccatataggcgatttcatcaagtgtatactgcaactcatacaccacccataagggatatgataatcgttgaaaccattata-gtt 38677844  T
Q  253 tatgctctcaataatgcagtgtatagt 279  Q
    ||| ||||||||| |||||||| ||||    
T  38677843 tatcctctcaatattgcagtgtctagt 38677817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 9032689 - 9032637
Alignment:
Q  222 gatatgaaattcattaaaaactttatatgcttatgctctcaataatgcagtgt 274  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||||| |||||    
T  9032689 gatataaaattcattaaaaactttatatgcttatcctcttaataatgtagtgt 9032637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 174
Target Start/End: Original strand, 38641604 - 38641635
Alignment:
Q  143 tctcatgcaagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||||||||||    
T  38641604 tctcatgcaagcggccccacttgacactcata 38641635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 174
Target Start/End: Complemental strand, 43657196 - 43657165
Alignment:
Q  143 tctcatgcaagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||||||||||    
T  43657196 tctcatgcaagcggccccacttgacactcata 43657165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 37997 - 38228
Alignment:
Q  14 agacacttgtgaatgttagaggtcaatcacttgcatcacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccatgtgtgtgcgcgg-- 110  Q
    ||||||||||| |||||||||||| |||||  |||||||||||||||||||||||| |||  ||| || |||||| |||||||| || | ||||  ||      
T  37997 agacacttgtgtatgttagaggtctatcacccgcatcacacccccacaattcttgtcgttggcgctgtggtgcgcaaataggccgtgcgcgtgcttggat 38096  T
Q  111 tattcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatac 208  Q
    | ||||||| |||||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||| ||||||| | |||||||||||||||    
T  38097 ttttcatgagtgctctagagatttcgccaatatctcatgcaagcggccccacttgacactcacataggtgattttatcaagtgtatgctgcaaatcatac 38196  T
Q  209 accacccataagggatatgaaattcattaaaa 240  Q
    ||||||||||||||||||||||||||||||||    
T  38197 accacccataagggatatgaaattcattaaaa 38228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 51 - 228
Target Start/End: Complemental strand, 34234885 - 34234706
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||  | ||||||||| ||||||||||||||||| ||||||||||||    
T  34234885 acacccccacaattcttgctgttacgcggtggtgcgctaataggccatgcgtgtgcctgatattcatgagtgctctagagattttgctaagatctcatgc 34234786  T
Q  151 aagcggccccacttgacactc--atagatgatttcatcaagtatttgctgcaaatcatacaccacccataagggatatga 228  Q
    ||||||||||||||||| |||  ||||  ||||||||||||| | |||||||| ||||||||||| ||||||||||||||    
T  34234785 aagcggccccacttgactctcatataggcgatttcatcaagtgtatgctgcaagtcatacaccacgcataagggatatga 34234706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 14922844 - 14922613
Alignment:
Q  14 agacacttgtgaatgttagaggtcaatcacttgcatcacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccatgtgtgtgcgcggta 112  Q
    |||||||| || ||||||| |||| | |||| ||||||||||||||||||||||||  ||| |||||| |||| |||||||||| || | ||||    |     
T  14922844 agacacttatgtatgttagcggtctaccactcgcatcacacccccacaattcttgtcattaacgcggtggtgcactaataggccgtgcgcgtgccttatt 14922745  T
Q  113 --ttcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacact--catagatgatttcatcaagtatttgctgcaaatcatac 208  Q
      ||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||  ||||| |||||||||||||| | |||||||||||||||    
T  14922744 atttcatgagtgctctagagattttgccaagatctcatacaagcggccccacttgacactcacataggtgatttcatcaagtgtatgctgcaaatcatac 14922645  T
Q  209 accacccataagggatatgaaattcattaaaa 240  Q
    |||||  ||||| ||||||||| |||||||||    
T  14922644 accacttataagagatatgaaactcattaaaa 14922613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 34096675 - 34096837
Alignment:
Q  14 agacacttgtgaatgttagaggtcaatcacttgcatcacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccatgtgtgtgcgcgg-- 110  Q
    ||||||||||| |||||||||||| |||||  ||||| |||||||||||||||||| |||  ||| || |||||| |||||||| || | ||||  ||      
T  34096675 agacacttgtgtatgttagaggtctatcacccgcatcgcacccccacaattcttgtcgttggcgctgtggtgcgcaaataggccgtgcgcgtgcttggat 34096774  T
Q  111 -tattcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactca 172  Q
     | ||||||| |||||||||||||| || || |||||||||||||||||||||||||||||||    
T  34096775 attttcatgagtgctctagagatttcgccaatatctcatgcaagcggccccacttgacactca 34096837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 6950442 - 6950612
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||| ||||||||||||| ||||||||||||||||||||||||| | || ||||||  ||||||||||| |||||| |||| |  || | | ||||||||    
T  6950442 acactcccacaattcttgctgttacgcggttgtgcgctaataggtcgtgcgtgtgcctggtattcatgagtgctctggaga-tccgccacggtctcatgc 6950540  T
Q  151 aagcggccccacttgacactc--atagatgatttcatcaagtatttgctgcaaatcatacaccacccataagg 221  Q
    |||| ||||||||||||||||  |||| ||||| |||| ||| | |||| | ||||| |||||||||||||||    
T  6950541 aagcagccccacttgacactcatataggtgattccatctagtgtatgctac-aatcaaacaccacccataagg 6950612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 219
Target Start/End: Original strand, 24042271 - 24042439
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||  || | ||||  ||||||| ||| |||||||||||    || | | ||||||||    
T  24042271 acacccccataattcttgctgttacgcggttgtgcgctaataggctgtgcgcgtgcctggtattcgtgagtgctctagagaccc-gccacggtctcatgc 24042369  T
Q  151 aagcggccccacttgacactcataga--tgatttcatcaagtatttgctgcaaatcatacaccacccataa 219  Q
    |||||||||||||||||||||||| |  ||||| |||| ||| | |||| |||  ||||||||||||||||    
T  24042370 aagcggccccacttgacactcatataggtgattccatctagtgtatgctacaac-catacaccacccataa 24042439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 230
Target Start/End: Complemental strand, 15516408 - 15516238
Alignment:
Q  61 aattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgcaagcggcccc 160  Q
    |||| ||| ||||||||| |||||||| ||||||||| | | |||   ||| ||||||| |||||||||||    || | | ||||||||||||||| ||    
T  15516408 aattgttgctgttacgcgattgtgcgcgaataggccaagcgcgtgtctggtcttcatgagtgctctagagaccc-gccacggtctcatgcaagcggctcc 15516310  T
Q  161 acttgacactcatagatg--atttcatcaagtatttgctgcaaatcatacaccacccataagggatatgaaa 230  Q
    ||||||||| |||| | |  |||||||||||| | || ||||| ||||||||||| ||||||||||||||||    
T  15516309 acttgacacccatataggcaatttcatcaagtgtatgttgcaagtcatacaccactcataagggatatgaaa 15516238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 19975588 - 19975539
Alignment:
Q  47 catcacacccccacaattcttgttgttacgcggttgtgcgctaataggcc 96  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  19975588 catcacacccccacaattcttgctgttacgtggttgtgcgctaataggcc 19975539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 113 - 274
Target Start/End: Complemental strand, 6685507 - 6685344
Alignment:
Q  113 ttcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatacac 210  Q
    ||||||| ||||| |||||||| |  |||||||||| |||||||||||||||||||||||  ||| |||||||||||||| | |||||||||||||||||    
T  6685507 ttcatgagtgctcaagagatttcgtcaagatctcatacaagcggccccacttgacactcacataggtgatttcatcaagtgtatgctgcaaatcatacac 6685408  T
Q  211 cacccataagggatatgaaattcattaaaaactttatatgcttatgctctcaataatgcagtgt 274  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  ||||| |||||||||||    
T  6685407 cacccataagggatatgaaattcattaaaaactttataggcttatcatctcagtaatgcagtgt 6685344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 41 - 272
Target Start/End: Original strand, 6661022 - 6661259
Alignment:
Q  41 cacttgcatcacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccatgtgtgtgcgcggta---ttcatgaatgctctagagattttg 136  Q
    |||| |||||||||||||||| ||||||| |||  ||| || |||||| ||||||||||| | ||||  || |   ||||||| ||||| |||||||| |    
T  6661022 cactcgcatcacacccccacatttcttgtcgttggcgctgtggtgcgcgaataggccatgcgcgtgcctggaaattttcatgagtgctccagagatttcg 6661121  T
Q  137 caaagatctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatacaccacccataagggatatgaaattca 234  Q
    |  ||||||||| |||||||||||||||||||||||  ||| ||||||||||||||   || ||||||||||||||||||||||||||||||||||||||    
T  6661122 ccgagatctcatacaagcggccccacttgacactcacataggtgatttcatcaagtgcatgatgcaaatcatacaccacccataagggatatgaaattca 6661221  T
Q  235 ttaaaaactttatatgcttatgctctcaataatgcagt 272  Q
    |||||| ||| |||  ||||| |||||| |||||||||    
T  6661222 ttaaaagcttgatagacttatcctctcagtaatgcagt 6661259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 6668548 - 6668670
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| |||||||||||||| |||||||||||| || | ||||  ||||||||||| |||||||||||   ||| | | |||||| |    
T  6668548 acacccccacaattcttgctgttacgcggttgtccgctaataggccttgcgcgtgcctggtattcatgagtgctctagaga-cctgccacggtctcatac 6668646  T
Q  151 aagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||    
T  6668647 aagcggccccacttgacactcata 6668670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 43291426 - 43291304
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| || | ||||  ||||||||||| |||||||||||    || | | |||||| |    
T  43291426 acacccccacaattcttgttgttacgcggttgtgccctaataggccgtgcgcgtgcctggtattcatgagtgctctagaga-cccgccacggtctcatac 43291328  T
Q  151 aagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||    
T  43291327 aagcggccccacttgacactcata 43291304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 174
Target Start/End: Original strand, 8989815 - 8989846
Alignment:
Q  143 tctcatgcaagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||||||||||    
T  8989815 tctcatgcaagcggccccacttgacactcata 8989846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 56417520 - 56417459
Alignment:
Q  205 atacaccacccataagggatatgaaattcattaaaaactttatatgcttatgctctcaataat 267  Q
    ||||||||| | |||| ||||||||| ||||||||||||||||| |||||  |||||||||||    
T  56417520 atacaccacacgtaagcgatatgaaaatcattaaaaactttata-gcttaccctctcaataat 56417459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 572521 - 572568
Alignment:
Q  145 tcatgcaagcggccccacttgacact--catagatgatttcatcaagt 190  Q
    |||| |||||||||||||||||||||  ||||| ||||||||||||||    
T  572521 tcatacaagcggccccacttgacactcacataggtgatttcatcaagt 572568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 113 - 274
Target Start/End: Complemental strand, 2434246 - 2434083
Alignment:
Q  113 ttcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatacac 210  Q
    ||||||| ||||||||||||||||  |||||||||| || ||||||||||||||||||||  ||| ||||||| |||||| | |||||||||||||||||    
T  2434246 ttcatgagtgctctagagattttgtcaagatctcatacaggcggccccacttgacactcacataggtgatttcttcaagtgtatgctgcaaatcatacac 2434147  T
Q  211 cacccataagggatatgaaattcattaaaaactttatatgcttatgctctcaataatgcagtgt 274  Q
    ||||||||||||||||||||||||||||||  |||||| |||||| |||||| ||||| |||||    
T  2434146 cacccataagggatatgaaattcattaaaagttttataggcttatcctctcattaatggagtgt 2434083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 222
Target Start/End: Original strand, 32353103 - 32353274
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || | ||||  |||||| |||| ||||| |||||    || | | ||||||||    
T  32353103 acacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgcgcgtgcctggtatttatgagtgctccagaga-cccgccacggtctcatgc 32353201  T
Q  151 aagcggccccacttgacactc--atagatgatttcatcaagtatttgctgcaaatcatacaccacccataaggg 222  Q
    |||||||||||||||||||||  |||| |||||||||| ||| | |||| |  | |||||||||||||||||||    
T  32353202 aagcggccccacttgacactcatataggtgatttcatctagtgtatgctac-gaccatacaccacccataaggg 32353274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 39426924 - 39427046
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| |||||| |||||||||| ||||||||| || | ||||  ||||||||||| |||||||||||    || | | ||||||||    
T  39426924 acacccccacaattcttgctgttacacggttgtgcggtaataggccgtgcgcgtgcctggtattcatgagtgctctagaga-cccgccacggtctcatgc 39427022  T
Q  151 aagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||    
T  39427023 aagcggccccacttgacactcata 39427046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 31207338 - 31207460
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| |||||||||||||| |||||||||||| || | |||   ||||||||||| |||||||||||    || |   ||||||||    
T  31207338 acacccccacaattcttgctgttacgcggttgttcgctaataggccgtgcgcgtggctggtattcatgagtgctctagaga-cccgccactgtctcatgc 31207436  T
Q  151 aagcggccccacttgacactcata 174  Q
    ||||||||||| ||||||||||||    
T  31207437 aagcggccccaattgacactcata 31207460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 174
Target Start/End: Complemental strand, 32354621 - 32354590
Alignment:
Q  143 tctcatgcaagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||||||||||    
T  32354621 tctcatgcaagcggccccacttgacactcata 32354590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 274
Target Start/End: Complemental strand, 19436486 - 19436221
Alignment:
Q  14 agacacttgtgaatgttagaggtcaatcacttgcatcacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccatgtgtgtgcgcggt- 111  Q
    |||||||| || ||||||| |||| | |||| | ||||||||||||||||||||  ||||| ||| || ||||||||||||||  ||   || |  |||     
T  19436486 agacacttatgtatgttagcggtctaccactcgaatcacacccccacaattcttactgttaacgctgtggtgcgctaataggctgtgctcgtacctggtt 19436387  T
Q  112 -attcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatac 208  Q
     |||||||| ||||| ||| |||| || |||||||||| ||| ||| |||||||||||||||  ||| |||||||||||||| | ||||| |||||||||    
T  19436386 aattcatgagtgctccagatatttcgccaagatctcatacaaacgggcccacttgacactcacataggtgatttcatcaagtgtatgctgaaaatcatac 19436287  T
Q  209 accacccataagggatatgaaattcattaaaaactttatatgcttatgctctcaataatgcagtgt 274  Q
    |||||||||||||||||||||||||||||||| ||  | || ||||| ||||||||||||||||||    
T  19436286 accacccataagggatatgaaattcattaaaagctacaaatacttatcctctcaataatgcagtgt 19436221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 10938743 - 10938865
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| |||||||||||||||| | ||||||||||| | ||||  ||||||||||| |||||||||||    || | | |||||| |    
T  10938743 acacccccacaattcttgctgttacgcggttgtgcacgaataggccatgcgcgtgcctggtattcatgagtgctctagaga-cccgccacggtctcatac 10938841  T
Q  151 aagcggccccacttgacactcata 174  Q
    |||||||||||||||| |||||||    
T  10938842 aagcggccccacttgaaactcata 10938865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 10944605 - 10944727
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| |||||||||||||||| | ||||||||||| | ||||  ||||||||||| |||||||||||    || | | |||||| |    
T  10944605 acacccccacaattcttgctgttacgcggttgtgcacgaataggccatgcgcgtgcctggtattcatgagtgctctagaga-cccgccacggtctcatac 10944703  T
Q  151 aagcggccccacttgacactcata 174  Q
    |||||||||||||||| |||||||    
T  10944704 aagcggccccacttgaaactcata 10944727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 26969661 - 26969783
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||| ||| ||| | |||||||| ||||||||||||||||||||| | |||   |||||||||||||||||||||||    || | | ||||||||    
T  26969661 acacccccgcaaatctagctgttacgccgttgtgcgctaataggccatgcgcgtgtctggtattcatgaatgctctagaga-cccgccacggtctcatgc 26969759  T
Q  151 aagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||    
T  26969760 aagcggccccacttgacactcata 26969783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 14632156 - 14632185
Alignment:
Q  143 tctcatgcaagcggccccacttgacactca 172  Q
    ||||||||||||||||||||||||||||||    
T  14632156 tctcatgcaagcggccccacttgacactca 14632185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 51 - 201
Target Start/End: Complemental strand, 86424 - 86272
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    ||||| ||||||||||||||||||| |||||||||||||||| |||||| | |||   ||||||||||| || |||||||||||||| ||||||||||||    
T  86424 acacctccacaattcttgttgttacacggttgtgcgctaatacgccatgcgcgtgtctggtattcatgagtgttctagagattttgccaagatctcatgc 86325  T
Q  151 aagcggccccacttgacactc--atagatgatttcatcaagtatttgctgcaa 201  Q
    |||||||||||||||||||||  ||||  ||||||||||||| | ||||||||    
T  86324 aagcggccccacttgacactcatataggcgatttcatcaagtctatgctgcaa 86272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 113 - 240
Target Start/End: Original strand, 25635838 - 25635967
Alignment:
Q  113 ttcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatacac 210  Q
    ||||||| ||||| |||||||| || |||||| ||| ||||||  |||||||||||||||  ||| ||||||||||||||   |||||||||||||||||    
T  25635838 ttcatgagtgctccagagatttcgccaagatcacatacaagcgatcccacttgacactcacataggtgatttcatcaagtgcatgctgcaaatcatacac 25635937  T
Q  211 cacccataagggatatgaaattcattaaaa 240  Q
    ||||||||||||||||||||||||||||||    
T  25635938 cacccataagggatatgaaattcattaaaa 25635967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 26707931 - 26708022
Alignment:
Q  16 acacttgtgaatgttagaggtcaatcacttgcatcacacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcg 107  Q
    ||||||||| |||||||||||||||  | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  26707931 acacttgtgtatgttagaggtcaatatcctgcatcacacccccacaattcttgttgctacgcggttgtgcgctaataggccatgcgtgtgcg 26708022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 26977665 - 26977756
Alignment:
Q  16 acacttgtgaatgttagaggtcaatcacttgcatcacacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcg 107  Q
    ||||||||| |||||||||||||||  | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  26977665 acacttgtgtatgttagaggtcaatatcctgcatcacacccccacaattcttgttgctacgcggttgtgcgctaataggccatgcgtgtgcg 26977756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 174
Target Start/End: Complemental strand, 26052658 - 26052627
Alignment:
Q  143 tctcatgcaagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||||||||||    
T  26052658 tctcatgcaagcggccccacttgacactcata 26052627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 16357163 - 16357268
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||| | ||   |||||||||| ||||||||||||||||| ||||||||||||    
T  16357163 acaccctcacaattcttgttgttacgcggttgtgcgctaataggccgtgtgcgggcctagtattcatgactgctctagagattttgccaagatctcatgc 16357262  T
Q  151 aagcgg 156  Q
    ||||||    
T  16357263 aagcgg 16357268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 228
Target Start/End: Original strand, 11634925 - 11635102
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    ||||||||  ||||||||||||||| | |||||||| ||||||| |||| | ||||  | ||||||||| ||||||||||||||||| ||||||| ||||    
T  11634925 acacccccctaattcttgttgttacacagttgtgcgttaataggtcatgcgcgtgcctgatattcatgagtgctctagagattttgctaagatct-atgc 11635023  T
Q  151 aagcggccccacttgacactcataga--tgatttcatcaagtatttgctgcaaatcatacaccacccataagggatatga 228  Q
    |||||| ||||||||||||||||| |   |||||||||||| || | ||| || ||||||| | ||||||||||||||||    
T  11635024 aagcggtcccacttgacactcatataagagatttcatcaag-atattctgaaagtcatacatctcccataagggatatga 11635102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 53727480 - 53727602
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    ||||||||| |||||| | | |||||| ||||||||||||||||||||| | ||||  ||||||||||| |||||||||||    || | | ||||||||    
T  53727480 acacccccagaattctagctattacgccgttgtgcgctaataggccatgcgcgtgcctggtattcatgagtgctctagaga-cccgccacggtctcatgc 53727578  T
Q  151 aagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||    
T  53727579 aagcggccccacttgacactcata 53727602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 274
Target Start/End: Original strand, 16363776 - 16363906
Alignment:
Q  150 caagcggccccacttgacactcatagatg--atttcatcaagtatttgctgcaaatcatacaccacccataagggatatgaaattcattaaaaactttat 247  Q
    ||||||||||||||||||||||||| | |  |||||||||||| | |||||||| |||||||||||||||||||||||||| | || || ||| | ||||    
T  16363776 caagcggccccacttgacactcatataggcgatttcatcaagtgtatgctgcaagtcatacaccacccataagggatatgataatcgttgaaagcattat 16363875  T
Q  248 at----gcttatgctctcaataatgcagtgt 274  Q
    ||    |||||| ||||||||| ||||||||    
T  16363876 attgtagcttatcctctcaatattgcagtgt 16363906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 19930864 - 19930942
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctaga 129  Q
    ||||||||||||||||||||||||| | |||||||||||||||||| |  | ||||  ||||||||||| |||||||||    
T  19930864 acacccccacaattcttgttgttacacagttgtgcgctaataggccgtacgcgtgcctggtattcatgagtgctctaga 19930942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 42254385 - 42254463
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctaga 129  Q
    |||||||||||||||||| ||||| | |||||| |||||||||||| || | |||   |||||||||||||||||||||    
T  42254385 acacccccacaattcttgatgttatgtggttgtacgctaataggccgtgcgcgtgtctggtattcatgaatgctctaga 42254463  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 14657464 - 14657385
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagag 130  Q
    |||||||||||||||| | | ||| |||||||||||||||||| || || | ||||  ||||||||||| ||||||||||    
T  14657464 acacccccacaattctagctattatgcggttgtgcgctaatagaccgtgcgcgtgcctggtattcatgagtgctctagag 14657385  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 174
Target Start/End: Complemental strand, 32895426 - 32895395
Alignment:
Q  143 tctcatgcaagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||||||||||    
T  32895426 tctcatgcaagcggccccacttgacactcata 32895395  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 49873935 - 49874015
Alignment:
Q  194 tgctgcaaatcatacaccacccataagggatatgaaattcattaaaaactttatatgcttatgctctcaataatgcagtgt 274  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||    
T  49873935 tgctgcaaatcatacaccacccacaagggatatgaaattcgttaaaagctttgtatgcttatcctctcaataatgcagtgt 49874015  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 49388230 - 49388352
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||| |||| ||||  | ||||||||| || ||||||||    || | | ||||||||    
T  49388230 acacccccacaattcttgctgttacgcggttgtgcgctaagaggccgtgtgcgtgcctgatattcatgagtgttctagaga-cccgccatggtctcatgc 49388328  T
Q  151 aagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||    
T  49388329 aagcggccccacttgacactcata 49388352  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 1968215 - 1968093
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| |||||||||||||| |||||||||| | || | ||||  | ||||||||| |||||||||||    || | | ||||||||    
T  1968215 acacccccacaattcttgctgttacgcggttgtccgctaataggtcgtgcgcgtgcctgatattcatgagtgctctagaga-cccgccacggtctcatgc 1968117  T
Q  151 aagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||    
T  1968116 aagcggccccacttgacactcata 1968093  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 172
Target Start/End: Original strand, 38826148 - 38826265
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||||   |||||||||||| |||||||| || || | || |  ||||||||||| |||||||||||    || |  |||||||||    
T  38826148 acacccccacaattcttgt---tacgcggttgtgtgctaatagaccgtgcgcgtacttggtattcatgagtgctctagaga-ccagccacaatctcatgc 38826243  T
Q  151 aagcggccccacttgacactca 172  Q
    ||||||||||||||||||||||    
T  38826244 aagcggccccacttgacactca 38826265  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 174
Target Start/End: Complemental strand, 24172406 - 24172375
Alignment:
Q  143 tctcatgcaagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||||||||||    
T  24172406 tctcatgcaagcggccccacttgacactcata 24172375  T

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Target: scaffold0028 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 127112 - 127018
Alignment:
Q  79 gttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactcata 174  Q
    ||||||||||||||| ||||| | ||||  ||||||| ||| |||||||||||    || | | ||||||||||||||||||||||||||||||||    
T  127112 gttgtgcgctaatagaccatgcgcgtgcctggtattcttgagtgctctagagaccc-gccacggtctcatgcaagcggccccacttgacactcata 127018  T

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