View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_high_24 (Length: 272)
Name: NF9935_high_24
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 33216405 - 33216652
Alignment:
| Q |
14 |
cagttatagccactgtagcatatccgaatttgaacaaatcaatatcttccgcgatttgcaatcgacaatatttctatatagcatgccaataataaacatg |
113 |
Q |
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| T |
33216405 |
cagttatagccactgtagcatatccgaatttgaacaaatcaatatcttccgcaatttgcaatcgataatatttctatatagcatgccaataataaacatg |
33216504 |
T |
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| Q |
114 |
gtaagctttaaacttacggttcaatcgagctaaaacctcctttcgtctaccctccaacttatcctttgtatcagacaaactctcaaaatggggagcatac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33216505 |
gtaagctttaaacttacggttcaatcgagctaaaacctcctttcgtcttccctccaacttatcctttgtatcagacaaactctcaaaatggggagcatac |
33216604 |
T |
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| Q |
214 |
gaaacctgtagtcggttcccaaggaaaacaaactcatctaattttctt |
261 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33216605 |
gaaacctgtagtcggtttccaaggaaaacaaactcatctaattttctt |
33216652 |
T |
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