View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9935_high_27 (Length: 252)

Name: NF9935_high_27
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9935_high_27
NF9935_high_27
[»] chr5 (7 HSPs)
chr5 (1-252)||(29572572-29572822)
chr5 (1-252)||(29573949-29574199)
chr5 (1-252)||(29575326-29575576)
chr5 (1-252)||(29576703-29576953)
chr5 (1-252)||(29578080-29578330)
chr5 (1-252)||(29579457-29579707)
chr5 (33-200)||(23923048-23923215)
[»] chr7 (4 HSPs)
chr7 (31-136)||(23054802-23054907)
chr7 (49-136)||(47923910-47923997)
chr7 (39-140)||(5865312-5865413)
chr7 (78-139)||(22819552-22819613)
[»] chr1 (2 HSPs)
chr1 (68-136)||(4422889-4422957)
chr1 (78-106)||(48265586-48265614)
[»] chr3 (3 HSPs)
chr3 (29-126)||(9509949-9510046)
chr3 (29-126)||(9517924-9518021)
chr3 (78-139)||(25132349-25132410)
[»] chr6 (1 HSPs)
chr6 (39-140)||(900688-900789)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 29572822 - 29572572
Alignment:
Q  1 caaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctc 100  Q
    ||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || |||||||||||||||||||||||    
T  29572822 caaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactcctc 29572723  T
Q  101 ctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccgcta 200  Q
    |||||||| ||| ||| |||| ||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29572722 ctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccgcta 29572623  T
Q  201 gatcaaaacaacagcctaaaacgccgacaaagaggcacatctcctaaccacc 252  Q
    |||| ||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  29572622 gatc-aaacaacagcctaaaacgctgacagagaagcacatctcctaaccacc 29572572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 29574199 - 29573949
Alignment:
Q  1 caaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctc 100  Q
    ||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || |||||||||||||||||||||||    
T  29574199 caaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactcctc 29574100  T
Q  101 ctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccgcta 200  Q
    |||||||| ||| ||| |||| ||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29574099 ctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccgcta 29574000  T
Q  201 gatcaaaacaacagcctaaaacgccgacaaagaggcacatctcctaaccacc 252  Q
    |||| ||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  29573999 gatc-aaacaacagcctaaaacgctgacagagaagcacatctcctaaccacc 29573949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 29575576 - 29575326
Alignment:
Q  1 caaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctc 100  Q
    ||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || |||||||||||||||||||||||    
T  29575576 caaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactcctc 29575477  T
Q  101 ctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccgcta 200  Q
    |||||||| ||| ||| |||| ||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29575476 ctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccgcta 29575377  T
Q  201 gatcaaaacaacagcctaaaacgccgacaaagaggcacatctcctaaccacc 252  Q
    |||| ||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  29575376 gatc-aaacaacagcctaaaacgctgacagagaagcacatctcctaaccacc 29575326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 29576953 - 29576703
Alignment:
Q  1 caaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctc 100  Q
    ||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || |||||||||||||||||||||||    
T  29576953 caaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactcctc 29576854  T
Q  101 ctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccgcta 200  Q
    |||||||| ||| ||| |||| ||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29576853 ctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccgcta 29576754  T
Q  201 gatcaaaacaacagcctaaaacgccgacaaagaggcacatctcctaaccacc 252  Q
    |||| ||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  29576753 gatc-aaacaacagcctaaaacgctgacagagaagcacatctcctaaccacc 29576703  T

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Target: chr5; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 29578330 - 29578080
Alignment:
Q  1 caaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctc 100  Q
    ||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || |||||||||||||||||||||||    
T  29578330 caaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactcctc 29578231  T
Q  101 ctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccgcta 200  Q
    |||||||| ||| ||| |||| ||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578230 ctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccgcta 29578131  T
Q  201 gatcaaaacaacagcctaaaacgccgacaaagaggcacatctcctaaccacc 252  Q
    |||| ||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  29578130 gatc-aaacaacagcctaaaacgctgacagagaagcacatctcctaaccacc 29578080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 29579707 - 29579457
Alignment:
Q  1 caaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctc 100  Q
    ||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || |||||||||||||||||||||||    
T  29579707 caaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactcctc 29579608  T
Q  101 ctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccgcta 200  Q
    |||||||| ||| ||| |||| ||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29579607 ctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccgcta 29579508  T
Q  201 gatcaaaacaacagcctaaaacgccgacaaagaggcacatctcctaaccacc 252  Q
    |||| ||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  29579507 gatc-aaacaacagcctaaaacgctgacagagaagcacatctcctaaccacc 29579457  T

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Target: chr5; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 200
Target Start/End: Original strand, 23923048 - 23923215
Alignment:
Q  33 tgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgcc 132  Q
    ||||| ||||||||| |||||||||||| |||||||||| |||  |||||||||||||||| |||||||||||| | ||| |||||||||||||| ||||    
T  23923048 tgatcagaaacattaacctgcaaaataacgttagaaagtaacaacctacactccgctaacatctcctcctcccacacccacaacctcctcctccactgcc 23923147  T
Q  133 aagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccgcta 200  Q
    ||||||||            | ||||||| |||||||||||||||| |||||||| ||||||||||||    
T  23923148 aagcctcaccccctccccccaacctagagggaacatagtagcaactgaagacaacttgttctccgcta 23923215  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 23054907 - 23054802
Alignment:
Q  31 agtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattg 130  Q
    ||||||| |||| || | |||||| ||||| |||||||||| | || |||||||||||||||| ||  |||||||| | ||| |||||||||||||| ||    
T  23054907 agtgatccgaaatatcaacctgcataataaagttagaaagtaatatcctacactccgctaacatcttttcctcccacacccacaacctcctcctccactg 23054808  T
Q  131 ccaagc 136  Q
    ||||||    
T  23054807 ccaagc 23054802  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 47923910 - 47923997
Alignment:
Q  49 cctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagc 136  Q
    ||||||||| || |||||||||| || |  |||||||| |||||| ||| |||||||| | ||| |||||||||||||| ||||||||    
T  47923910 cctgcaaaacaacgttagaaagtaacgtcatacactcctctaacatctcttcctcccacacccacaacctcctcctccactgccaagc 47923997  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 5865312 - 5865413
Alignment:
Q  39 gaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagcct 138  Q
    |||||||||  ||||||| |||  |||| |||| |||  |||||||||||||||||||||||||| ||   ||| ||| ||| |||||| ||||| ||||    
T  5865312 gaaacattaatctgcaaagtaacattagcaagtaacaacctacactccgctaacaactcctcctctcacgcccacaacatccgcctccactgccacgcct 5865411  T
Q  139 ca 140  Q
    ||    
T  5865412 ca 5865413  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 22819613 - 22819552
Alignment:
Q  78 ctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagcctc 139  Q
    ||||||||| |||||||||||||||||||   ||| |||||||| | ||||||||| |||||    
T  22819613 ctacactcccctaacaactcctcctcccaggcccacaacctcctacgccattgccacgcctc 22819552  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 4422889 - 4422957
Alignment:
Q  68 aagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagc 136  Q
    |||| |||| |||||||||||||||||||| ||||| |||| ||| |||||||||||||| ||||||||    
T  4422889 aagtaacatcctacactccgctaacaactcttcctctcatacccacaacctcctcctccactgccaagc 4422957  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 106
Target Start/End: Complemental strand, 48265614 - 48265586
Alignment:
Q  78 ctacactccgctaacaactcctcctccca 106  Q
    |||||||||||||||||||||||||||||    
T  48265614 ctacactccgctaacaactcctcctccca 48265586  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 9509949 - 9510046
Alignment:
Q  29 caagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctcc 126  Q
    ||||||||| |||||| ||  | ||||| |||  |||| |||| | || ||||||||||||| ||||||||||||||||  ||| |||||||||||||    
T  9509949 caagtgatctgaaacactagacagcaaagtaacattagcaagtaagatcctacactccgctaccaactcctcctcccatgcccacaacctcctcctcc 9510046  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 9517924 - 9518021
Alignment:
Q  29 caagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctcc 126  Q
    ||||||||| |||||| ||  | ||||| |||  |||| |||| | || ||||||||||||| ||||||||||||||||  ||| |||||||||||||    
T  9517924 caagtgatctgaaacactagacagcaaagtaacattagcaagtaagatcctacactccgctaccaactcctcctcccatgcccacaacctcctcctcc 9518021  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 25132349 - 25132410
Alignment:
Q  78 ctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagcctc 139  Q
    ||||||||| |||  |||||||||||||| | ||| |||||||| ||||||| |||||||||    
T  25132349 ctacactcccctagtaactcctcctcccacacccacaacctccttctccatttccaagcctc 25132410  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 900789 - 900688
Alignment:
Q  39 gaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagcct 138  Q
    ||||||||  |||||||| |||  |||| |||| |||  |||||||||||||||||||| ||||||||   ||| ||||||||| | || ||||| ||||    
T  900789 gaaacattgacctgcaaagtaacattagcaagtaacaacctacactccgctaacaactcatcctcccacgcccacaacctcctctttcactgccacgcct 900690  T
Q  139 ca 140  Q
    ||    
T  900689 ca 900688  T

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