View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9935_high_4 (Length: 552)

Name: NF9935_high_4
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9935_high_4
NF9935_high_4
[»] chr4 (7 HSPs)
chr4 (33-384)||(45858795-45859142)
chr4 (38-386)||(45876731-45877069)
chr4 (51-182)||(56208539-56208670)
chr4 (44-188)||(47293456-47293600)
chr4 (50-188)||(55705881-55706019)
chr4 (55-163)||(54304249-54304357)
chr4 (294-376)||(56208678-56208760)
[»] chr5 (3 HSPs)
chr5 (43-188)||(35854542-35854687)
chr5 (112-188)||(35802504-35802580)
chr5 (55-186)||(10521303-10521434)
[»] chr2 (2 HSPs)
chr2 (52-193)||(24357450-24357591)
chr2 (276-383)||(24357269-24357376)
[»] chr8 (2 HSPs)
chr8 (50-189)||(7972083-7972222)
chr8 (55-188)||(7961718-7961851)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 33 - 384
Target Start/End: Original strand, 45858795 - 45859142
Alignment:
Q  33 ttcttaaatcaacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgaga 132  Q
    |||| |||||||||||| | ||||||||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||    
T  45858795 ttctgaaatcaacctgattatcttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgaga 45858894  T
Q  133 tactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtctacctagtgacaagacagtagctgtaagtaactattggatggatat 232  Q
    |||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||||    |||||||    
T  45858895 tactgcatccttaccggtccaaaccctctcctgtgcagcctcttccatcttgtctacctagtgacaggacagtagcggtaagtaactat----tggatat 45858990  T
Q  233 acgagaaggaagaacagaaaacatggaaaatagatttttcttaaataaatttaaaacatacagtcattgatctagacagagcagctttgtctcgaaattg 332  Q
    || || |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | ||  || || ||||||||||||||||||||    
T  45858991 acaaggaggaagaacataaagcatggaaaatagatttttcttaaataaatttaaaacatacagtcatagctcgggaaagggcagctttgtctcgaaattg 45859090  T
Q  333 tttataaacattttctgttctcttggcaaatagcactgcttcatgtggcctg 384  Q
    ||||||| |||| | |||||||||||||||||||  ||||||||||||||||    
T  45859091 tttataagcattctgtgttctcttggcaaatagctttgcttcatgtggcctg 45859142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 38 - 386
Target Start/End: Original strand, 45876731 - 45877069
Alignment:
Q  38 aaatcaacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactg 137  Q
    ||||||||||| ||||||||||||||||  || |||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||    
T  45876731 aaatcaacctgtctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctg 45876830  T
Q  138 catccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtctacctagtgacaagacagtagctgtaagtaactattggatggatatacgag 237  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||  || |||||||    ||||||||    |||| |||  ||    
T  45876831 catccttaccggtccaaaccctcccttgtgcaacctcttccatcttgtctacctagcgacgggatagtagct----gtaactat----tggacatagaag 45876922  T
Q  238 aaggaagaacagaaaacatggaaaatagatttttcttaaataaatttaaaacatacagtcattgatctagacagagcagctttgtctcgaaattgtttat 337  Q
      ||||||||||||||||  |||||||| ||||||||  || |||||||||||||||||||||||||| || | ||| || || || |||||||||||||    
T  45876923 ggggaagaacagaaaaca--gaaaatagctttttcttgtatgaatttaaaacatacagtcattgatctggaaaaagccgccttatcacgaaattgtttat 45877020  T
Q  338 aaacattttctgttctcttggcaaatagcactgcttcatgtggcctgca 386  Q
    ||| ||| | ||    ||||||||||||| |||||||||||||||||||    
T  45877021 aaaaattctgtgcagacttggcaaatagctctgcttcatgtggcctgca 45877069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 56208539 - 56208670
Alignment:
Q  51 tgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggt 150  Q
    |||||||||||||| | ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||    
T  56208539 tgtcttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagagatagtgcatctttaccggt 56208638  T
Q  151 ccaaaccctcccctgtgcaaccttttccatct 182  Q
    | ||||||||||||||||||||| ||||||||    
T  56208639 ctaaaccctcccctgtgcaacctcttccatct 56208670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 44 - 188
Target Start/End: Complemental strand, 47293600 - 47293456
Alignment:
Q  44 acctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatcct 143  Q
    ||||| |||| ||||||||||| |||||||| ||| |||||||||||||| || ||||  ||||||||||||||||||||||||||||||||||| ||||    
T  47293600 acctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatgagatactgcgtcct 47293501  T
Q  144 taccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 188  Q
    ||| |||||||| ||| ||||||||||||| ||||||||||||||    
T  47293500 tactggtccaaatccttccctgtgcaacctcttccatcttgtcta 47293456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 50 - 188
Target Start/End: Complemental strand, 55706019 - 55705881
Alignment:
Q  50 ctgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccgg 149  Q
    |||| |||||||||||  || |||| ||| |  |||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| || |||||||    
T  55706019 ctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtctttaccgg 55705920  T
Q  150 tccaaaccctcccctgtgcaaccttttccatcttgtcta 188  Q
    ||||||||||||| || ||||||| ||||||||||||||    
T  55705919 tccaaaccctcccatgcgcaacctcttccatcttgtcta 55705881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 54304357 - 54304249
Alignment:
Q  55 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 154  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||| | ||| ||||||||||||||||||||  |||||  ||| |||||||| ||||||    
T  54304357 ttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtccaa 54304258  T
Q  155 accctcccc 163  Q
    ||| |||||    
T  54304257 accttcccc 54304249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 294 - 376
Target Start/End: Original strand, 56208678 - 56208760
Alignment:
Q  294 agtcattgatctagacagagcagctttgtctcgaaattgtttataaacattttctgttctcttggcaaatagcactgcttcat 376  Q
    |||||||||||| || ||||| || || ||||||||||||||||||| || || || |||||| ||||||||| |||||||||    
T  56208678 agtcattgatctggaaagagccgcattatctcgaaattgtttataaatatgttgtgctctcttagcaaatagctctgcttcat 56208760  T

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Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 35854687 - 35854542
Alignment:
Q  43 aacctgactgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatcc 142  Q
    |||||| |||| ||||||||||| |||||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||    
T  35854687 aacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtcc 35854588  T
Q  143 ttaccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 188  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||    
T  35854587 ttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35854542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 35802504 - 35802580
Alignment:
Q  112 agcatcaaccaaaccatgagatactgcatccttaccggtccaaaccctcccctgtgcaaccttttccatcttgtcta 188  Q
    |||||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||| |||||||||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35802580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 55 - 186
Target Start/End: Complemental strand, 10521434 - 10521303
Alignment:
Q  55 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 154  Q
    ||||||||||| |||||| | ||| || |||||||||||||| |||| |||||||||||||||||||||||| |||||| |||| ||||| ||| |||||    
T  10521434 ttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccttgagatgctgcgtccttcccgatccaa 10521335  T
Q  155 accctcccctgtgcaaccttttccatcttgtc 186  Q
    | |||||  |||| || || || |||||||||    
T  10521334 atcctcctatgtggaatctctttcatcttgtc 10521303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 52 - 193
Target Start/End: Complemental strand, 24357591 - 24357450
Alignment:
Q  52 gtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtc 151  Q
    |||||||||||||| |||||||| ||| ||||| |||||||| || || |  |||||||||||||||||||||||||| ||| ||||||| ||||| |||    
T  24357591 gtcttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatctttaccagtc 24357492  T
Q  152 caaaccctcccctgtgcaaccttttccatcttgtctacctag 193  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||||    
T  24357491 caaactctcccctgtgctaccttctccatcttgtccacctag 24357450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 383
Target Start/End: Complemental strand, 24357376 - 24357269
Alignment:
Q  276 aataaatttaaaacatacagtcattgatctagacagagcagctttgtctcgaaattgtttataaacattttctgttctcttggcaaatagcactgcttca 375  Q
    |||||||||| ||||||||||||| ||||| || | ||| || ||||||||||||||||||||  |||| | ||     |||||||||||| ||||||||    
T  24357376 aataaatttagaacatacagtcatagatctggataaagctgccttgtctcgaaattgtttatatgcattctgtgcagatttggcaaatagctctgcttca 24357277  T
Q  376 tgtggcct 383  Q
    | ||||||    
T  24357276 tctggcct 24357269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 50 - 189
Target Start/End: Original strand, 7972083 - 7972222
Alignment:
Q  50 ctgtcttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccgg 149  Q
    |||| |||||| | || |||||||| ||| ||||||||||||||||| ||||  ||||  |||||||| |||||||||| |||||||||||| |||||||    
T  7972083 ctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaaaccattagatactgcatctttaccgg 7972182  T
Q  150 tccaaaccctcccctgtgcaaccttttccatcttgtctac 189  Q
    |||||| ||||| ||||||||||| |||||||||||||||    
T  7972183 tccaaatcctcctctgtgcaacctcttccatcttgtctac 7972222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 7961718 - 7961851
Alignment:
Q  55 ttgaggtatatcggccttcagtttggctatagcaatagcacgagataacccaccaatagcatcaaccaaaccatgagatactgcatccttaccggtccaa 154  Q
    |||||| |||| |||||||| ||| ||||||||||||||  | ||||  |||||||||||||| |||||| ||| ||||| |||||| ||||| ||||||    
T  7961718 ttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaatcattagatattgcatctttaccagtccaa 7961817  T
Q  155 accctcccctgtgcaaccttttccatcttgtcta 188  Q
    |  ||||| |||||||||| ||||||||||||||    
T  7961818 attctcccttgtgcaacctcttccatcttgtcta 7961851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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