View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_high_5 (Length: 542)
Name: NF9935_high_5
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_high_5 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 294 - 524
Target Start/End: Original strand, 26373851 - 26374083
Alignment:
| Q |
294 |
cggaagagtgagctagcaccaccagcttggaaggagaagcttgaggtcgtgaaagctgcaaaagacccaatcgaaatc--ggatctaaaacatgaagcaa |
391 |
Q |
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| T |
26373851 |
cggaagagtgagctagcaccactggcttggaaggagaagcttgaggtcgtgaaagctgcaaaagacatgaattaaaacatgaagcaaaaacatgaagcaa |
26373950 |
T |
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| Q |
392 |
aaacgagcaacaaacagccgtgagcgagcgaaaccatcccctaccacgcctttagagaaaacgacggaggagggtgacggccaccagaggaaaacccaaa |
491 |
Q |
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| T |
26373951 |
aaacgagcaacaaacagccgtgaccgagggaaaccatcccctaccacgcctttagagaaaacgacggaggagggtgacggccaccggaggaaaacccaaa |
26374050 |
T |
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| Q |
492 |
aagccgacgtcgagtggctagaaaggtggtgcg |
524 |
Q |
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| T |
26374051 |
aagccgacgtcgagtggctagaaaggtggtgcg |
26374083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 26373552 - 26373740
Alignment:
| Q |
16 |
agcacagaccatcaacacaaccagtttcagacgtgtctgaacccagatcatgggatgagtccaacacacgttagtaaccaaacagcccttaccggtttaa |
115 |
Q |
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| T |
26373552 |
agcacagaccaccaacacaaccagtttcagacgtgtctgaacccagattatgggatgagtccaacacacgttagtaaccaaacagcccttacgggtttaa |
26373651 |
T |
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| Q |
116 |
agaaccaattcctttcgggtttgcgaaacagaa-catcaaaacaggtcacaactgttaccatgccctccaatctctgatcagcaacccc |
203 |
Q |
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| T |
26373652 |
agaaccataccctttcgggtttgcgaaacagaaccaccaaaacaggtcacaactgttaccatgccctccaatctctgatcagcaacccc |
26373740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 28541701 - 28541750
Alignment:
| Q |
33 |
caaccagtttcagacgtgtctgaacccagatcatgggatgagtccaacac |
82 |
Q |
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| T |
28541701 |
caaccagtttcagacgtgtttgaacccatatcgagggatgagttcaacac |
28541750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 31055 - 30867
Alignment:
| Q |
16 |
agcacagaccatcaacacaaccagtttcagacgtgtctgaacccagatcatgggatgagtccaacacacgttagtaaccaaacagcccttaccggtttaa |
115 |
Q |
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| T |
31055 |
agcacaaaccaccaacacaaccagtttcagacgtgtctgaactcagatcatgggatgagtctaacacacgttagtaaccaaacaacccttataggtttaa |
30956 |
T |
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| Q |
116 |
agaaccaattcctttcgggtttgcgaaacagaa-catcaaaacaggtcacaactgttaccatgccctccaatctctgatcagcaacccc |
203 |
Q |
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| T |
30955 |
agaaccataccctttcgggtttgcgaaacaaaaccaccaaaacatgtcacaattgttaccatgtcctccaatctctgatcagcaacccc |
30867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 44742107 - 44742001
Alignment:
| Q |
16 |
agcacagaccatcaacacaaccagtttcagacgtgtctgaacccagatcatgggatgagtccaacacacgttagtaaccaaacagcccttaccggtttaa |
115 |
Q |
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| T |
44742107 |
agcacggaccaccaacacaaacggttccagacgcgcttgaacccagatcaagggatgagtccaacacacgttagtaaccaaacagcccttacgggttaaa |
44742008 |
T |
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| Q |
116 |
agaacca |
122 |
Q |
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| T |
44742007 |
agaacca |
44742001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 14635958 - 14636057
Alignment:
| Q |
21 |
agaccatcaacacaaccagtttcagacgtgtctgaacccagatcatgggatgagtccaacacacgttagtaaccaaacagcccttaccggtttaaagaac |
120 |
Q |
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| T |
14635958 |
agaccaccaactcaaccagtttcagacgtgtttgaacccagatcaagggatgagttca--acacgttagttacc-aacagccctttcgggtttatagaac |
14636054 |
T |
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