View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9935_high_6 (Length: 508)

Name: NF9935_high_6
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9935_high_6
NF9935_high_6
[»] chr7 (1 HSPs)
chr7 (89-496)||(11346054-11346461)


Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 89 - 496
Target Start/End: Complemental strand, 11346461 - 11346054
Alignment:
Q  89 catgaatatttctaacatattaaagcaaaacattatcagagtataaacaatgtatcatagacaacacataagtttcagaggcataatgtaaacaacaata 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11346461 catgaatatttctaacatattaaagcaaaacattatcagagtataaacaatgtatcatagacaacacataagtttcagaggcataatgtaaacaacaata 11346362  T
Q  189 aataaacacaaggtgtgcattctaannnnnnnnnnnnnnnnnctgctgcatcatcttaagaaaagaggcaatctcagacttaatctcttcgaattgttgc 288  Q
    |||||||||||||||||||||||||                  |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11346361 aataaacacaaggtgtgcattctaaggttgttgttcttgttgttgctgcgtcatcttaagaaaagaggcaatctcagacttaatctcttcaaattgttgc 11346262  T
Q  289 ttcacagtcatttccagatcctctgtctttttaatctgagcttcttgaattgctttctgttgcttatgttcttccttgacttcagcaagttgtctcctca 388  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11346261 ttcacaatcatttccagatcctttgtctttttaatctgagcttcttgaattgctttctgttgcttctgttcttccttgacttcagcaagttgtctcctca 11346162  T
Q  389 aagcttaagataccatattttgctcaaacaaatcttcctgaagtttctcaacaaactttacttcttcaaggtctttcatatacaaagctttcataattgg 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || |||    
T  11346161 aagcttaagataccatattttgctcaaacaaatcttcctgaagtttctcaacaaactttacttcttcagggtctttcatattcaaagctttcagaactgg 11346062  T
Q  489 tttctctg 496  Q
    ||||||||    
T  11346061 tttctctg 11346054  T

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