View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_high_7 (Length: 508)
Name: NF9935_high_7
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 26297512 - 26297938
Alignment:
| Q |
1 |
agagctattccttacaacaatggcgtctctaacccctggagtcctctcaaaacttctccaaaactccacttcaacaaactcccaccgtcaaccactcctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26297512 |
agagctattccttacaacaatggcgtctctaacccctggagtcctctcaaaacttctccaaaactccacttcaacaaacacccaccgtcaaccactcctt |
26297611 |
T |
|
| Q |
101 |
caagttactgaaatcatccctcgtctttcagaagacacatttcaacccgccaccggctactttctcaaactctccgactctcttcactccgcttatgtct |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26297612 |
caagtaactgaaatcatccctcgtctttcagaagacacatttcaacccgccaccggctactttctcaaactctccgactctcttcactccgcttatgtct |
26297711 |
T |
|
| Q |
201 |
ccgtctccgactccgacgccgagttaatccgttctgataaactccagctcggtcagttcgtttacgtcactcgctttgataacgatgcttcctcttccgt |
300 |
Q |
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| T |
26297712 |
ccgtctccgactccgacgccgagttaatccgttctgataaactccagctcggtcagttcgtttacgtcactcgctttgataacgatgcttcctcttccgt |
26297811 |
T |
|
| Q |
301 |
tccaagagtttctggtttgaaaactatttctaaaagaagagcttgtgttggtaatcctgttgatttggtttctactgattctttgcgacttgcagctttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || | |
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| T |
26297812 |
tccaagagtttctggtttgaaaactatttctaaaagaagagcttgtgttggtaatcctgttgatttggtttctactgattctttaagacttgcaactgcg |
26297911 |
T |
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| Q |
401 |
aaactgaacggtaatgttaagaagaag |
427 |
Q |
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| T |
26297912 |
aaactgaatggtaatgttaagaagaag |
26297938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 451 - 492
Target Start/End: Original strand, 26297947 - 26297988
Alignment:
| Q |
451 |
taatgggaataaggataacaatgtggttgttaatgttgaaat |
492 |
Q |
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| T |
26297947 |
taatgggaataaggataacaatgtggttgttaatgttgaaat |
26297988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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