View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_low_11 (Length: 439)
Name: NF9935_low_11
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_11 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 3709257 - 3709001
Alignment:
| Q |
1 |
gatatttcggcacattgaaggacaattgtggataatcatgttacacattcaaaaaccaaaatgactattatcccaatttatgtattataatacctagatg |
100 |
Q |
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| T |
3709257 |
gatatttcggcacattgaaggacaattgtggctaatcacgttacacattcagaaactaaaatgactattatcccaatttatgtattataatacctagatg |
3709158 |
T |
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| Q |
101 |
a-----atatgctttggtttactattgaacataaattcgattaaaatttgaaaactcaactttaaactaacataattttggagagttttgccaaagaaat |
195 |
Q |
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| T |
3709157 |
atcataatatgctttggtttactattgaacataaattcgattaaaatttgaaaactcaactttaaactaacataattttggagagttttgccaaagaaat |
3709058 |
T |
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| Q |
196 |
atctaatgcttatgcaatttatgagtttgtctaatatgaacctctcaaaaatgagtc |
252 |
Q |
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| T |
3709057 |
atctaatgcttatgcaatttatgagtttgtctaatatgaacctctcaaaaatgagtc |
3709001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 369 - 424
Target Start/End: Complemental strand, 3708744 - 3708689
Alignment:
| Q |
369 |
ataacttaagacaaaacctttactatactagaaatagcaagattcccctttgaatc |
424 |
Q |
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| T |
3708744 |
ataacttaagacaaaacctttactatactagaaatagtaagattcccctttgaatc |
3708689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 3708934 - 3708893
Alignment:
| Q |
319 |
gtcatgttttattataggtgaggttgggttgccttggaagaa |
360 |
Q |
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| T |
3708934 |
gtcatgttttattataggtgaggttaggttgcctttgaagaa |
3708893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 29714760 - 29714789
Alignment:
| Q |
40 |
gttacacattcaaaaaccaaaatgactatt |
69 |
Q |
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| T |
29714760 |
gttacacattcaaaaaccaaaatgactatt |
29714789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 81639 - 81672
Alignment:
| Q |
40 |
gttacacattcaaaaaccaaaatgactattatcc |
73 |
Q |
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| T |
81639 |
gttacacattcaaagaccaaaatgactattatcc |
81672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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