View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_low_12 (Length: 415)
Name: NF9935_low_12
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 9412781 - 9412404
Alignment:
| Q |
1 |
ctctcgacaatgtatcttttaagaaagtgaaagtgagcaattttgaggtgcctaaagatcaatacccaaaataaaattctactccagttgtaggctaaac |
100 |
Q |
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| T |
9412781 |
ctctcgacaatgtattttttaagaaagtgaaagtgagcaattttgaggtgcctaaagatcaatacccaaaataaaattctactccagctgtaggctaaac |
9412682 |
T |
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| Q |
101 |
caaatgcaagagaaggcccaatatgcttctgatatatataaatcccaattcttctacgtcttcatcacagtcttgcgcaaaacctaaccctaagtgtccc |
200 |
Q |
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| T |
9412681 |
caaatgcaagagaaggcccaatatgcttctgata--tataaatcccaattcttctacgtcttcatcacagtcttgcgcaaaa----------------cc |
9412600 |
T |
|
| Q |
201 |
taaccctttcatagtaaatatcattcaccagagacacagctatgcagttcagtcatcaacaaaaaagaagacgaaaaacaacaacggttgtttctgccga |
300 |
Q |
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| T |
9412599 |
taaccctttcatagtaaatatcattcaccagaaacacagccatgcagttcagtcatcaacaaaaaagaagacgaaaaacaacaacggttgttgttgccga |
9412500 |
T |
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| Q |
301 |
tgctgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaacaatggtgctaactatcgcgacttgaagtctctctcgcttgtctc |
399 |
Q |
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| T |
9412499 |
---tgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaacgatggtgctaactatcgcgagttgaagtctctctcgcttgtctc |
9412404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 7565152 - 7565028
Alignment:
| Q |
4 |
tcgacaatgtatcttttaagaaagtgaaagtgagcaattttgaggtgcctaaagatcaatacccaaaataaaattctactccagttgtaggctaaaccaa |
103 |
Q |
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| T |
7565152 |
tcgacaatgtat-ttttagaaaagtgaaagtgagcaattttgaggtgc-taaagagcactgcccaaaataaaattctactgcagctgtaggctaaaccaa |
7565055 |
T |
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| Q |
104 |
atgcaagagaaggcccaatatgcttct |
130 |
Q |
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||||||||||| ||||| ||||||||| |
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| T |
7565054 |
atgcaagagaaagcccagtatgcttct |
7565028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 360
Target Start/End: Complemental strand, 7561391 - 7561332
Alignment:
| Q |
301 |
tgctgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaacaatgg |
360 |
Q |
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| T |
7561391 |
tgctgatttttatttacctgatgactgttggaaacatgtcttcaagttcctcaacaatgg |
7561332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 362
Target Start/End: Complemental strand, 7555572 - 7555512
Alignment:
| Q |
302 |
gctgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaacaatggtg |
362 |
Q |
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|||| |||||||||||| |||||||||||| || | |||||||||| |||||||| |||| |
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| T |
7555572 |
gctgctttttatttacccgatgaatgttggcaacttgtcttcaaatttctcaacaacggtg |
7555512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 51120325 - 51120372
Alignment:
| Q |
306 |
atttttatttacctgatgaatgttgggaaagtatcttcaaattcctca |
353 |
Q |
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|||| |||||||||||||| ||||||||| || ||||||||||||||| |
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| T |
51120325 |
atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca |
51120372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 10616246 - 10616209
Alignment:
| Q |
311 |
tatttacctgatgaatgttgggaaagtatcttcaaatt |
348 |
Q |
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|||||||||||||| ||||||||| ||||||||||||| |
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| T |
10616246 |
tatttacctgatgagtgttgggaatgtatcttcaaatt |
10616209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 554146 - 554097
Alignment:
| Q |
304 |
tgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctca |
353 |
Q |
| |
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||||||||| || |||||||||||||||||| | ||||||||||||||| |
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| T |
554146 |
tgatttttactttcctgatgaatgttgggaatttgtcttcaaattcctca |
554097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 566795 - 566754
Alignment:
| Q |
308 |
ttttatttacctgatgaatgttgggaaagtatcttcaaattc |
349 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||||||||||| |
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| T |
566795 |
ttttatttacctgatgactgttgggaacgtgtcttcaaattc |
566754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 642393 - 642341
Alignment:
| Q |
302 |
gctgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaa |
354 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | |||||||| || ||||| |
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| T |
642393 |
gctgagttttatttacctgatgaatgttgggagtgcatcttcaattttctcaa |
642341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 1537245 - 1537297
Alignment:
| Q |
305 |
gatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaacaa |
357 |
Q |
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||||| |||||||||||||| ||||||||| || | |||| |||||||||||| |
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| T |
1537245 |
gatttatatttacctgatgagtgttgggaatgtgtattcagattcctcaacaa |
1537297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 45244521 - 45244570
Alignment:
| Q |
306 |
atttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaac |
355 |
Q |
| |
|
|||| |||||||||||||| ||||||||| || |||| |||||||||||| |
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| T |
45244521 |
atttctatttacctgatgagtgttgggaatgtgtcttgaaattcctcaac |
45244570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 41886296 - 41886336
Alignment:
| Q |
311 |
tatttacctgatgaatgttgggaaagtatcttcaaattcct |
351 |
Q |
| |
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|||||||||||||| ||||||||| || ||||||||||||| |
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| T |
41886296 |
tatttacctgatgagtgttgggaatgtgtcttcaaattcct |
41886336 |
T |
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