View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9935_low_13 (Length: 414)

Name: NF9935_low_13
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9935_low_13
NF9935_low_13
[»] chr6 (10 HSPs)
chr6 (345-396)||(8522458-8522509)
chr6 (346-396)||(15686554-15686604)
chr6 (346-396)||(16101971-16102021)
chr6 (350-396)||(16804631-16804677)
chr6 (350-396)||(16812450-16812496)
chr6 (350-396)||(16829470-16829516)
chr6 (350-396)||(29492427-29492473)
chr6 (368-396)||(2288365-2288393)
chr6 (368-396)||(13763959-13763987)
chr6 (368-396)||(23352132-23352160)
[»] chr5 (18 HSPs)
chr5 (345-396)||(26495412-26495463)
chr5 (347-396)||(29325764-29325813)
chr5 (345-396)||(43120767-43120818)
chr5 (345-396)||(43124300-43124351)
chr5 (345-396)||(22759206-22759257)
chr5 (346-396)||(26361524-26361574)
chr5 (345-393)||(23671457-23671505)
chr5 (346-396)||(16256451-16256501)
chr5 (346-396)||(16260045-16260095)
chr5 (346-396)||(22590209-22590259)
chr5 (346-396)||(22593764-22593814)
chr5 (346-396)||(22597319-22597369)
chr5 (346-396)||(4397416-4397466)
chr5 (368-397)||(8953119-8953148)
chr5 (368-396)||(22469777-22469805)
chr5 (348-396)||(24277734-24277782)
chr5 (348-396)||(24384431-24384479)
chr5 (368-396)||(27869897-27869925)
[»] chr4 (21 HSPs)
chr4 (345-396)||(10313343-10313394)
chr4 (345-395)||(6511372-6511422)
chr4 (345-396)||(31131817-31131868)
chr4 (345-396)||(55503207-55503258)
chr4 (346-396)||(15280523-15280573)
chr4 (348-390)||(41791200-41791242)
chr4 (350-396)||(4170557-4170603)
chr4 (350-396)||(14698249-14698295)
chr4 (346-396)||(16359093-16359143)
chr4 (346-396)||(28382453-28382503)
chr4 (346-396)||(47127228-47127278)
chr4 (348-396)||(27027527-27027575)
chr4 (348-396)||(56116310-56116358)
chr4 (348-396)||(13877687-13877735)
chr4 (348-396)||(15242623-15242671)
chr4 (368-396)||(15989757-15989785)
chr4 (368-396)||(16278743-16278771)
chr4 (348-396)||(20899806-20899854)
chr4 (348-396)||(33684946-33684994)
chr4 (368-396)||(33848481-33848509)
chr4 (368-396)||(53388121-53388149)
[»] chr3 (21 HSPs)
chr3 (345-396)||(14951930-14951981)
chr3 (345-396)||(15010576-15010627)
chr3 (348-396)||(7631914-7631962)
chr3 (345-396)||(604027-604078)
chr3 (346-396)||(2035464-2035514)
chr3 (346-396)||(2039205-2039255)
chr3 (346-396)||(2042946-2042996)
chr3 (346-396)||(14037805-14037855)
chr3 (346-396)||(14041273-14041323)
chr3 (346-396)||(39230409-39230459)
chr3 (350-396)||(54972865-54972911)
chr3 (350-396)||(54975475-54975521)
chr3 (350-396)||(54978085-54978131)
chr3 (348-396)||(179866-179914)
chr3 (348-396)||(6806144-6806192)
chr3 (348-396)||(17211118-17211166)
chr3 (345-393)||(54046441-54046489)
chr3 (349-396)||(10990078-10990125)
chr3 (349-396)||(52339207-52339254)
chr3 (350-396)||(18958527-18958573)
chr3 (368-396)||(55292790-55292818)
[»] chr2 (16 HSPs)
chr2 (345-396)||(21239649-21239700)
chr2 (345-396)||(21242199-21242250)
chr2 (345-396)||(12628232-12628283)
chr2 (345-396)||(25036110-25036161)
chr2 (345-396)||(31755527-31755578)
chr2 (350-396)||(31503118-31503164)
chr2 (350-396)||(31505684-31505730)
chr2 (346-396)||(41685165-41685215)
chr2 (346-396)||(44620562-44620612)
chr2 (348-396)||(23374863-23374911)
chr2 (348-396)||(28352496-28352544)
chr2 (345-396)||(24504270-24504320)
chr2 (348-396)||(10040318-10040366)
chr2 (368-396)||(20591511-20591539)
chr2 (368-396)||(24275753-24275781)
chr2 (348-396)||(28348671-28348719)
[»] chr1 (17 HSPs)
chr1 (347-396)||(45306842-45306891)
chr1 (345-396)||(2333498-2333549)
chr1 (350-396)||(20579022-20579068)
chr1 (350-396)||(20586715-20586761)
chr1 (345-396)||(24087106-24087157)
chr1 (346-396)||(37358180-37358230)
chr1 (346-396)||(14432790-14432840)
chr1 (346-396)||(20630905-20630955)
chr1 (346-396)||(22900730-22900780)
chr1 (348-396)||(293762-293810)
chr1 (348-396)||(18270180-18270228)
chr1 (348-396)||(18274834-18274882)
chr1 (348-396)||(28204787-28204835)
chr1 (349-396)||(21181600-21181647)
chr1 (346-396)||(36181203-36181253)
chr1 (368-396)||(18823462-18823490)
chr1 (368-396)||(20901018-20901046)
[»] chr8 (11 HSPs)
chr8 (345-396)||(28853502-28853553)
chr8 (345-396)||(44523291-44523342)
chr8 (345-396)||(45135449-45135500)
chr8 (350-396)||(7301692-7301738)
chr8 (346-396)||(24708169-24708219)
chr8 (346-396)||(22145863-22145913)
chr8 (356-396)||(38186186-38186226)
chr8 (350-396)||(6608796-6608842)
chr8 (346-396)||(22059855-22059905)
chr8 (348-396)||(363594-363642)
chr8 (348-396)||(43111889-43111937)
[»] chr7 (12 HSPs)
chr7 (347-396)||(16005868-16005917)
chr7 (345-396)||(8775850-8775901)
chr7 (345-396)||(38827775-38827826)
chr7 (347-396)||(4993038-4993087)
chr7 (345-396)||(124651-124702)
chr7 (346-396)||(13733967-13734017)
chr7 (350-396)||(21743827-21743873)
chr7 (346-396)||(48784825-48784875)
chr7 (348-396)||(13850125-13850173)
chr7 (368-396)||(13255430-13255458)
chr7 (368-396)||(13395985-13396013)
chr7 (356-396)||(48743232-48743272)
[»] scaffold0141 (1 HSPs)
scaffold0141 (345-396)||(32717-32768)
[»] scaffold0049 (1 HSPs)
scaffold0049 (345-396)||(82044-82095)
[»] scaffold0021 (1 HSPs)
scaffold0021 (346-396)||(134351-134401)
[»] scaffold0491 (1 HSPs)
scaffold0491 (345-393)||(10444-10492)
[»] scaffold0525 (2 HSPs)
scaffold0525 (350-396)||(11394-11440)
scaffold0525 (368-396)||(8682-8710)
[»] scaffold0447 (1 HSPs)
scaffold0447 (348-396)||(13893-13941)
[»] scaffold0383 (1 HSPs)
scaffold0383 (348-396)||(11888-11936)
[»] scaffold0126 (1 HSPs)
scaffold0126 (348-396)||(5680-5728)
[»] scaffold0107 (1 HSPs)
scaffold0107 (348-396)||(2758-2806)
[»] scaffold0004 (1 HSPs)
scaffold0004 (348-396)||(59146-59194)
[»] scaffold1276 (1 HSPs)
scaffold1276 (348-393)||(112-157)
[»] scaffold0635 (1 HSPs)
scaffold0635 (348-396)||(6704-6752)
[»] scaffold0500 (1 HSPs)
scaffold0500 (348-396)||(11855-11903)
[»] scaffold0413 (1 HSPs)
scaffold0413 (348-396)||(10549-10597)
[»] scaffold0381 (1 HSPs)
scaffold0381 (348-396)||(14114-14162)
[»] scaffold0109 (1 HSPs)
scaffold0109 (348-396)||(1989-2037)
[»] scaffold0044 (1 HSPs)
scaffold0044 (368-396)||(6214-6242)


Alignment Details
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 8522458 - 8522509
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8522458 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 8522509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 15686604 - 15686554
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||| ||||   |||||||||||||||||||||||||||||    
T  15686604 acgtggtactatttccaacgggttgaatgactaagcattccggggcataag 15686554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 16101971 - 16102021
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   |||||||||||||||||||||||||||||    
T  16101971 acgtggtactaatttcaacgggttgaatgactaagcattccggggcataag 16102021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 16804631 - 16804677
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||   ||||||||||||||| |||||||||||||    
T  16804631 ggtactattttcaacgggttgaatgactaagcaatccggggcataag 16804677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 16812450 - 16812496
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||   ||||||||||||||| |||||||||||||    
T  16812450 ggtactattttcaacgggttgaatgactaagcaatccggggcataag 16812496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 16829470 - 16829516
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||   ||||||||||||||| |||||||||||||    
T  16829470 ggtactattttcaacgggttgaatgactaagcaatccggggcataag 16829516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 29492427 - 29492473
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||    ||||||||||||||||||||||||||||    
T  29492427 ggtactattttcaacgggctgaatgactaagcattccggggcataag 29492473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Complemental strand, 2288393 - 2288365
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  2288393 ttgaatgactaagcattccggggcataag 2288365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Original strand, 13763959 - 13763987
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  13763959 ttgaatgactaagcattccggggcataag 13763987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Original strand, 23352132 - 23352160
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  23352132 ttgaatgactaagcattccggggcataag 23352160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 26495412 - 26495463
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26495412 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 26495463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 347 - 396
Target Start/End: Complemental strand, 29325813 - 29325764
Alignment:
Q  347 cgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29325813 cgtggtactattttcaacacattgaatgactaagcattccggggcataag 29325764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 43120767 - 43120818
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  43120767 gacggggtactattttcaactcattgaatgactaagcattccggggcataag 43120818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 43124300 - 43124351
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  43124300 gacggggtactattttcaactcattgaatgactaagcattccggggcataag 43124351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 22759257 - 22759206
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||||||||    
T  22759257 gacgtggtactatttccaacatgttgaatgactaagcattccggggcataag 22759206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 26361574 - 26361524
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||    
T  26361574 acgtggtactattttcaacgggttgaatgactaagcattccggggcataag 26361524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 23671457 - 23671505
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcat 393  Q
    |||||||||| ||||||||||||||||||| ||||||||||| ||||||    
T  23671457 gacgtggtaccattttcaacacattgaatggctaagcattccagggcat 23671505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 16256501 - 16256451
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||   ||||||||||||||||||||| |||||||    
T  16256501 acgtggtactattttcaacgtgttgaatgactaagcattccggagcataag 16256451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 16260095 - 16260045
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||   ||||||||||||||||||||| |||||||    
T  16260095 acgtggtactattttcaacgtgttgaatgactaagcattccggagcataag 16260045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 22590259 - 22590209
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||   ||||||||||||||||||||| |||||||    
T  22590259 acgtggtactattttcaacgtgttgaatgactaagcattccggagcataag 22590209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 22593814 - 22593764
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||   ||||||||||||||||||||| |||||||    
T  22593814 acgtggtactattttcaacgtgttgaatgactaagcattccggagcataag 22593764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 22597369 - 22597319
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||   ||||||||||||||||||||| |||||||    
T  22597369 acgtggtactattttcaacgtgttgaatgactaagcattccggagcataag 22597319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 4397416 - 4397466
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||| ||||   |||||||||||||||||| ||||||||||    
T  4397416 acgtggtactatttccaacgggttgaatgactaagcattctggggcataag 4397466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 397
Target Start/End: Complemental strand, 8953148 - 8953119
Alignment:
Q  368 ttgaatgactaagcattccggggcataagt 397  Q
    ||||||||||||||||||||||||||||||    
T  8953148 ttgaatgactaagcattccggggcataagt 8953119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Original strand, 22469777 - 22469805
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  22469777 ttgaatgactaagcattccggggcataag 22469805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 24277782 - 24277734
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   |||||||| ||||||||||||||||||||    
T  24277782 gtggtaccattttcaacgtgttgaatgaataagcattccggggcataag 24277734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 24384431 - 24384479
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   |||||||| ||||||||||||||||||||    
T  24384431 gtggtaccattttcaacgtgttgaatgaataagcattccggggcataag 24384479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Complemental strand, 27869925 - 27869897
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  27869925 ttgaatgactaagcattccggggcataag 27869897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 10313343 - 10313394
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10313343 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 10313394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 395
Target Start/End: Original strand, 6511372 - 6511422
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataa 395  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6511372 gacgtggtactattttcaacacgttgaatgactaagcattccggggcataa 6511422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 31131868 - 31131817
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  31131868 gacggggtactattttcaactcattgaatgactaagcattccggggcataag 31131817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 55503258 - 55503207
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||| ||||||||||||||| || ||||||||||||||||||||||||||||    
T  55503258 gacggggtactattttcaactcaatgaatgactaagcattccggggcataag 55503207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 15280573 - 15280523
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||    
T  15280573 acgtggtactattttcaacgggttgaatgactaagcattccggggcataag 15280523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 348 - 390
Target Start/End: Original strand, 41791200 - 41791242
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccgggg 390  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  41791200 gtggtactgttttcaacacattgaatgactaagcattccgggg 41791242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 4170557 - 4170603
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||||    
T  4170557 ggtactattttcaactcaatgaatgactaagcattccgaggcataag 4170603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 14698249 - 14698295
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||||    
T  14698249 ggtactattttcaactcaatgaatgactaagcattccgaggcataag 14698295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 16359093 - 16359143
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   |||||||||||||||||||||||||||||    
T  16359093 acgtggtactaatttcaacgggttgaatgactaagcattccggggcataag 16359143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 28382453 - 28382503
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   |||||||||||||||||||||||||||||    
T  28382453 acgtggtactaatttcaacgggttgaatgactaagcattccggggcataag 28382503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 47127278 - 47127228
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   |||||||||||||||||||||||||||||    
T  47127278 acgtggtactaatttcaacgggttgaatgactaagcattccggggcataag 47127228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 27027527 - 27027575
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   |||||||||||||||||||||||||||||    
T  27027527 gtggtaccattttcaacgtgttgaatgactaagcattccggggcataag 27027575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 56116358 - 56116310
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   |||||||||||||||||||||||||||||    
T  56116358 gtggtaccattttcaacgggttgaatgactaagcattccggggcataag 56116310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 13877687 - 13877735
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   ||||||||||||||||||| |||||||||    
T  13877687 gtggtacaattttcaacgtgttgaatgactaagcattccagggcataag 13877735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 15242671 - 15242623
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   || ||||||||||||||||||||||||||    
T  15242671 gtggtaccattttcaacgtgttaaatgactaagcattccggggcataag 15242623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Original strand, 15989757 - 15989785
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  15989757 ttgaatgactaagcattccggggcataag 15989785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Complemental strand, 16278771 - 16278743
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  16278771 ttgaatgactaagcattccggggcataag 16278743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 20899854 - 20899806
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   ||||||||||||||||||| |||||||||    
T  20899854 gtggtaccattttcaacgtgttgaatgactaagcattccagggcataag 20899806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 33684994 - 33684946
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| ||||||||||  |||||||||||||||||||  ||||||||    
T  33684994 gtggtaccattttcaacatgttgaatgactaagcattccatggcataag 33684946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Original strand, 33848481 - 33848509
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  33848481 ttgaatgactaagcattccggggcataag 33848509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Complemental strand, 53388149 - 53388121
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  53388149 ttgaatgactaagcattccggggcataag 53388121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 14951981 - 14951930
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14951981 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 14951930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 15010627 - 15010576
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  15010627 gacgtggtactatttccaacacgttgaatgactaagcattccggggcataag 15010576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 7631914 - 7631962
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||    
T  7631914 gtggtactatttccaacacgttgaatgactaagcattccggggcataag 7631962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 604078 - 604027
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| |||||| |||||||||||||||||| ||||||||||    
T  604078 gacgtggtactatttccaacacgttgaatgactaagcattctggggcataag 604027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 2035514 - 2035464
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   |||||||||||||||||||||||||||||    
T  2035514 acgtggtactaatttcaacgggttgaatgactaagcattccggggcataag 2035464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 2039255 - 2039205
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   |||||||||||||||||||||||||||||    
T  2039255 acgtggtactaatttcaacgggttgaatgactaagcattccggggcataag 2039205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 2042996 - 2042946
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   |||||||||||||||||||||||||||||    
T  2042996 acgtggtactaatttcaacgggttgaatgactaagcattccggggcataag 2042946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 14037805 - 14037855
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   |||||||||||||||||||||||||||||    
T  14037805 acgtggtactaatttcaacgggttgaatgactaagcattccggggcataag 14037855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 14041273 - 14041323
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   |||||||||||||||||||||||||||||    
T  14041273 acgtggtactaatttcaacgggttgaatgactaagcattccggggcataag 14041323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 39230409 - 39230459
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   |||||||||||||||||||||||||||||    
T  39230409 acgtggtactaatttcaacgggttgaatgactaagcattccggggcataag 39230459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 54972865 - 54972911
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||||    
T  54972865 ggtactattttcaactcaatgaatgactaagcattccgaggcataag 54972911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 54975475 - 54975521
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||||    
T  54975475 ggtactattttcaactcaatgaatgactaagcattccgaggcataag 54975521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 54978085 - 54978131
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||||    
T  54978085 ggtactattttcaactcaatgaatgactaagcattccgaggcataag 54978131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 179914 - 179866
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   |||||||||||||||||||||||||||||    
T  179914 gtggtaccattttcaacgtgttgaatgactaagcattccggggcataag 179866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 6806192 - 6806144
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   |||||||||||||||||||||||||||||    
T  6806192 gtggtaccattttcaacgtgttgaatgactaagcattccggggcataag 6806144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 17211118 - 17211166
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   |||||||||||||||||||||||||||||    
T  17211118 gtggtaccattttcaacgggttgaatgactaagcattccggggcataag 17211166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 54046441 - 54046489
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcat 393  Q
    ||||||| ||||||| | |||| ||||||||||||||||||||||||||    
T  54046441 gacgtggcactatttccgacacgttgaatgactaagcattccggggcat 54046489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 10990125 - 10990078
Alignment:
Q  349 tggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||| |||||||||   |||||||||||||||||||||||||||||    
T  10990125 tggtaccattttcaacgggttgaatgactaagcattccggggcataag 10990078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 52339254 - 52339207
Alignment:
Q  349 tggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||| |||||||||   |||||||||||||||||||||||||||||    
T  52339254 tggtaccattttcaacgggttgaatgactaagcattccggggcataag 52339207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 18958527 - 18958573
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||    ||||||||||||||||||||||||||||    
T  18958527 ggtactattttcaacgggctgaatgactaagcattccggggcataag 18958573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Complemental strand, 55292818 - 55292790
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  55292818 ttgaatgactaagcattccggggcataag 55292790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 21239700 - 21239649
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21239700 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 21239649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 21242250 - 21242199
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21242250 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 21242199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 12628283 - 12628232
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12628283 gacgtggtactattttcaacacgttgaatgactaagcattccggggcataag 12628232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 25036161 - 25036110
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  25036161 gacgtggtactatttccaacacgttgaatgactaagcattccggggcataag 25036110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 31755527 - 31755578
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||| ||||||||||||||| || ||||||||||||||||||||||||||||    
T  31755527 gacggggtactattttcaactcaatgaatgactaagcattccggggcataag 31755578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 31503118 - 31503164
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||||    
T  31503118 ggtactattttcaactcaatgaatgactaagcattccgaggcataag 31503164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 31505684 - 31505730
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||||    
T  31505684 ggtactattttcaactcaatgaatgactaagcattccgaggcataag 31505730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 41685215 - 41685165
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   |||||||||||||||||||||||||||||    
T  41685215 acgtggtactaatttcaacgggttgaatgactaagcattccggggcataag 41685165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 44620562 - 44620612
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   |||||||||||||||||||||||||||||    
T  44620562 acgtggtactaatttcaacgggttgaatgactaagcattccggggcataag 44620612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 23374863 - 23374911
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   |||||||||||||||||||||||||||||    
T  23374863 gtggtaccattttcaacttgttgaatgactaagcattccggggcataag 23374911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 28352496 - 28352544
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   |||||||||||||||||||||||||||||    
T  28352496 gtggtaccattttcaacgggttgaatgactaagcattccggggcataag 28352544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 24504270 - 24504320
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||| |||||||||| |||| || ||||||||||||||||||||||||||||    
T  24504270 gacggggtactattt-caactcaatgaatgactaagcattccggggcataag 24504320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 10040366 - 10040318
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||    ||||||||||||||||||||||||||||    
T  10040366 gtggtaccattttcaacgtgatgaatgactaagcattccggggcataag 10040318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Complemental strand, 20591539 - 20591511
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  20591539 ttgaatgactaagcattccggggcataag 20591511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Complemental strand, 24275781 - 24275753
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  24275781 ttgaatgactaagcattccggggcataag 24275753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 28348671 - 28348719
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   |||||||||||| ||||||||||||||||    
T  28348671 gtggtaccattttcaacgggttgaatgactaatcattccggggcataag 28348719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 347 - 396
Target Start/End: Original strand, 45306842 - 45306891
Alignment:
Q  347 cgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45306842 cgtggtactattttcaacacattgaatgactaagcattccggggcataag 45306891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 2333549 - 2333498
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  2333549 gacgtggtactatttccaacacgttgaatgactaagcattccggggcataag 2333498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 20579022 - 20579068
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  20579022 ggtactattttcaactcattgaatgactaagcattccggggcataag 20579068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 20586715 - 20586761
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  20586715 ggtactattttcaactcattgaatgactaagcattccggggcataag 20586761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 24087106 - 24087157
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||||||||    
T  24087106 gacgtggtactatttccaacatgttgaatgactaagcattccggggcataag 24087157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 37358180 - 37358230
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||    
T  37358180 acgtggtactattttcaacgggttgaatgactaagcattccggggcataag 37358230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 14432840 - 14432790
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   |||||||||||||||||||||||||||||    
T  14432840 acgtggtactaatttcaacgggttgaatgactaagcattccggggcataag 14432790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 20630905 - 20630955
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   |||||||||||||||||||||||||||||    
T  20630905 acgtggtactaatttcaacgggttgaatgactaagcattccggggcataag 20630955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 22900780 - 22900730
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||   ||||||||||||||||||||| |||||||    
T  22900780 acgtggtactattttcaacgtgttgaatgactaagcattccggagcataag 22900730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 293762 - 293810
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   |||||||||||||||||||||||||||||    
T  293762 gtggtaccattttcaacgagttgaatgactaagcattccggggcataag 293810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 18270180 - 18270228
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||| ||||||||||||   |||||||||||||||||||||||||||||    
T  18270180 gtggcactattttcaacgtgttgaatgactaagcattccggggcataag 18270228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 18274834 - 18274882
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||| ||||||||||||   |||||||||||||||||||||||||||||    
T  18274834 gtggcactattttcaacgtgttgaatgactaagcattccggggcataag 18274882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 28204835 - 28204787
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   |||||||||||||||||||||||||||||    
T  28204835 gtggtaccattttcaacgtgttgaatgactaagcattccggggcataag 28204787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 21181647 - 21181600
Alignment:
Q  349 tggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||| |||||||||   |||||||||||||||||||||||||||||    
T  21181647 tggtaccattttcaacgtgttgaatgactaagcattccggggcataag 21181600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 36181203 - 36181253
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   ||||||||||||||||| |||||||||||    
T  36181203 acgtggtactaatttcaacgggttgaatgactaagcatttcggggcataag 36181253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Original strand, 18823462 - 18823490
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  18823462 ttgaatgactaagcattccggggcataag 18823490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Original strand, 20901018 - 20901046
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  20901018 ttgaatgactaagcattccggggcataag 20901046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 28853502 - 28853553
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28853502 gacggggtactattttcaacacattgaatgactaagcattccggggcataag 28853553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 44523342 - 44523291
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  44523342 gacgtggtactatttccaacacgttgaatgactaagcattccggggcataag 44523291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 45135500 - 45135449
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  45135500 gacggggtactattttcaactcattgaatgactaagcattccggggcataag 45135449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 7301738 - 7301692
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||    
T  7301738 ggtactattttcaactcgttgaatgactaagcattccggggcataag 7301692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 24708219 - 24708169
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||    
T  24708219 acgtggtactattttcaacgggttgaatgactaagcattccggggcataag 24708169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 22145913 - 22145863
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   |||||||||||||||||||||||||||||    
T  22145913 acgtggtactaatttcaacgggttgaatgactaagcattccggggcataag 22145863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 38186226 - 38186186
Alignment:
Q  356 attttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  38186226 attttcaacatgttgaatgactaagcattccggggcataag 38186186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 6608842 - 6608796
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| ||  |||||||||||||||||| ||||||||    
T  6608842 ggtactattttcaactcaacgaatgactaagcattccgaggcataag 6608796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 22059905 - 22059855
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   ||||||||||||||||| |||||||||||    
T  22059905 acgtggtactaatttcaacgggttgaatgactaagcatttcggggcataag 22059855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 363594 - 363642
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   ||||||||||||||||||| |||||||||    
T  363594 gtggtaccattttcaacgggttgaatgactaagcattccagggcataag 363642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 43111889 - 43111937
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   ||||||||||||||||||||||| |||||    
T  43111889 gtggtaccattttcaacgtgttgaatgactaagcattccgggggataag 43111937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 347 - 396
Target Start/End: Original strand, 16005868 - 16005917
Alignment:
Q  347 cgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16005868 cgtggtactattttcaacacattgaatgactaaacattccggggcataag 16005917  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 8775850 - 8775901
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  8775850 gacggggtactattttcaactcattgaatgactaagcattccggggcataag 8775901  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 38827775 - 38827826
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  38827775 gacgtggtactatttccaacacgttgaatgactaagcattccggggcataag 38827826  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 396
Target Start/End: Original strand, 4993038 - 4993087
Alignment:
Q  347 cgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  4993038 cgtggtactattttcaacacattgaatgactaagcattccttggcataag 4993087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 124702 - 124651
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||| ||||||||||||||| || ||||||||||||||||||||||||||||    
T  124702 gacggggtactattttcaactcaatgaatgactaagcattccggggcataag 124651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 13734017 - 13733967
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||    
T  13734017 acgtggtactattttcaacgggttgaatgactaagcattccggggcataag 13733967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 21743873 - 21743827
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||||    
T  21743873 ggtactattttcaactcaatgaatgactaagcattccgaggcataag 21743827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 48784825 - 48784875
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||| |||||||   |||||||||||||||||||||||||||||    
T  48784825 acgtggtactaatttcaacgggttgaatgactaagcattccggggcataag 48784875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 13850173 - 13850125
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   |||||||||||||||||||||||||||||    
T  13850173 gtggtaccattttcaacgtgttgaatgactaagcattccggggcataag 13850125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Original strand, 13255430 - 13255458
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  13255430 ttgaatgactaagcattccggggcataag 13255458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Complemental strand, 13396013 - 13395985
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  13396013 ttgaatgactaagcattccggggcataag 13395985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 396
Target Start/End: Original strand, 48743232 - 48743272
Alignment:
Q  356 attttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||  |||||||||||||||||| ||||||||||    
T  48743232 attttcaacatgttgaatgactaagcattctggggcataag 48743272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 32717 - 32768
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||| ||||||||||||||| || ||||||||||||||||||||||||||||    
T  32717 gacggggtactattttcaactcaatgaatgactaagcattccggggcataag 32768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 82095 - 82044
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||| ||||||||||||||| || ||||||||||||||||||||||||||||    
T  82095 gacggggtactattttcaactcaatgaatgactaagcattccggggcataag 82044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 134401 - 134351
Alignment:
Q  346 acgtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||    
T  134401 acgtggtactattttcaacgggttgaatgactaagcattccggggcataag 134351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 10444 - 10492
Alignment:
Q  345 gacgtggtactattttcaacacattgaatgactaagcattccggggcat 393  Q
    ||||||||  |||||||||||| ||||||||||||||||||||||||||    
T  10444 gacgtggtcttattttcaacacgttgaatgactaagcattccggggcat 10492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 11440 - 11394
Alignment:
Q  350 ggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||||||||||| | ||||||||||||||| |||||||||||||    
T  11440 ggtactattttcaactcgttgaatgactaagcagtccggggcataag 11394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Original strand, 8682 - 8710
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  8682 ttgaatgactaagcattccggggcataag 8710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0447
Description:

Target: scaffold0447; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 13893 - 13941
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| ||||||||||  ||||||||||||||||| |||||||||||    
T  13893 gtggtaccattttcaacatgttgaatgactaagcatttcggggcataag 13941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 11888 - 11936
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| ||||||||||  ||||||||||||||||| |||||||||||    
T  11888 gtggtaccattttcaacatgttgaatgactaagcatttcggggcataag 11936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 5680 - 5728
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   |||||||||||||||||||||||||||||    
T  5680 gtggtaccattttcaacgtgttgaatgactaagcattccggggcataag 5728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 2758 - 2806
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||   |||||||||||||||||||| ||||||||    
T  2758 gtggtactattttcaacgggttgaatgactaagcattccgcggcataag 2806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 59146 - 59194
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   |||||||||||||||||||||||||||||    
T  59146 gtggtaccattttcaacgtgttgaatgactaagcattccggggcataag 59194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1276 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1276
Description:

Target: scaffold1276; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 393
Target Start/End: Original strand, 112 - 157
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcat 393  Q
    |||||||| ||||||||   ||||||||||||||||||||||||||    
T  112 gtggtactgttttcaacgtgttgaatgactaagcattccggggcat 157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 6704 - 6752
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||    ||||||||||||||||||||||||||||    
T  6704 gtggtaccattttcaacgtgatgaatgactaagcattccggggcataag 6752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 11903 - 11855
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   ||||||||||||||||||| |||||||||    
T  11903 gtggtacaattttcaacgtgttgaatgactaagcattccagggcataag 11855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 10549 - 10597
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   |||||||| ||||||||||||||||||||    
T  10549 gtggtaccattttcaacgtgttgaatgagtaagcattccggggcataag 10597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 14162 - 14114
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   ||||||||||||||||||| |||||||||    
T  14162 gtggtacaattttcaacgtgttgaatgactaagcattccagggcataag 14114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 1989 - 2037
Alignment:
Q  348 gtggtactattttcaacacattgaatgactaagcattccggggcataag 396  Q
    ||||||| |||||||||   |||||||||||||||||| ||||||||||    
T  1989 gtggtaccattttcaacgggttgaatgactaagcattctggggcataag 2037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 396
Target Start/End: Complemental strand, 6242 - 6214
Alignment:
Q  368 ttgaatgactaagcattccggggcataag 396  Q
    |||||||||||||||||||||||||||||    
T  6242 ttgaatgactaagcattccggggcataag 6214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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