View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9935_low_14 (Length: 384)
Name: NF9935_low_14
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_14 |
 | |
|
| [»] scaffold0164 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 8 - 368
Target Start/End: Complemental strand, 10082612 - 10082252
Alignment:
| Q |
8 |
tggtggtacgatacttagcaaaccttaaaagcactgcaacatatggtgtatgtgttgcagcttgtgtcctaccttggtgctattcaatgtgggatgttgg |
107 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10082612 |
tggtggtacaatacttagcaaaccttaaaagcactgcaacatatggtgcatgtgttgcagcttgtgtcctaccttggtgctattcaatgtgggatgttgg |
10082513 |
T |
|
| Q |
108 |
ttgcaaaacatacattattggtgtggtgctattaatttgtacttagaattgtgtgccatcattgagagtgttagtgttattctggtgattctcatgtcta |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
10082512 |
ttgcaaaacatacattattggtgtggtgctattaatttgtacttagaattgtgtgccatcattgagagtgttactgttaatttggtgattctcatgtcta |
10082413 |
T |
|
| Q |
208 |
taattattatatctacaaaagtatcatgcaattattaatttaaaaggtcaactgaacaaggtgttgggcagcagagtggaagccgacaaaatgtgaggga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10082412 |
taattattatatctacaaaagtatcatgcaattattaatttaaaaggtcaattgaacaaggtgttgggcagcggagtggaagccgacaaaatgtgagggc |
10082313 |
T |
|
| Q |
308 |
tcttccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggtgaagat |
368 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10082312 |
tcctccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggcgaagat |
10082252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 10098384 - 10098126
Alignment:
| Q |
8 |
tggtggtacgatacttagcaaaccttaaaagcactgcaacatatggtgtatgtgttgcagcttgtgtcctaccttggtgctattcaatgtgggatgttgg |
107 |
Q |
| |
|
||||||| | |||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10098384 |
tggtggttcaatacttagcagaccataaaagcactgcaac-tatggtgtacgtgttgcagcttgtgtcctaccttggtgctattcatggtgggatgttgg |
10098286 |
T |
|
| Q |
108 |
ttgcaaaacatacattattggtgtggtgctattaatttgtacttagaattgtgtgccatcattgaga---------gtgttagtgttattctggtgattc |
198 |
Q |
| |
|
|||||| | ||| || || |||||| |||||||||||| | ||| ||||||||||||||||||| |||||||||||||| ||||| ||| |
|
|
| T |
10098285 |
ttgcaatgcccccatcataggggtggtgttattaatttgtattgagatttgtgtgccatcattgagatgattgagagtgttagtgttattttggtgtttc |
10098186 |
T |
|
| Q |
199 |
tcatgtctataattattatatctacaaaagtatcatgcaattattaatttaaaaggtcaa |
258 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| |
|
|
| T |
10098185 |
tcatgtctataattattatatctacagaagtaccatggaattattaatttaaaaggtcaa |
10098126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 264 - 367
Target Start/End: Original strand, 28694668 - 28694771
Alignment:
| Q |
264 |
caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggtg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28694668 |
caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggcg |
28694767 |
T |
|
| Q |
364 |
aaga |
367 |
Q |
| |
|
|||| |
|
|
| T |
28694768 |
aaga |
28694771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 264 - 367
Target Start/End: Complemental strand, 4443609 - 4443506
Alignment:
| Q |
264 |
caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggtg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
4443609 |
caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagtgtgtgatgatgatgcggatgacccctatgaagtgtatggtgagggcg |
4443510 |
T |
|
| Q |
364 |
aaga |
367 |
Q |
| |
|
|||| |
|
|
| T |
4443509 |
aaga |
4443506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 264 - 367
Target Start/End: Original strand, 13512507 - 13512610
Alignment:
| Q |
264 |
caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggtg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
13512507 |
caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagtgtgtgatgatgatgcggatgacccctatgaagtgtatggtgagggcg |
13512606 |
T |
|
| Q |
364 |
aaga |
367 |
Q |
| |
|
|||| |
|
|
| T |
13512607 |
aaga |
13512610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 264 - 368
Target Start/End: Complemental strand, 37364094 - 37363990
Alignment:
| Q |
264 |
caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggtg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37364094 |
caaggtgttgggcagcagagtggaagccgacaaaatgtgagggctcctccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggcg |
37363995 |
T |
|
| Q |
364 |
aagat |
368 |
Q |
| |
|
||||| |
|
|
| T |
37363994 |
aagat |
37363990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 264 - 367
Target Start/End: Original strand, 35600593 - 35600696
Alignment:
| Q |
264 |
caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggtg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35600593 |
caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggcg |
35600692 |
T |
|
| Q |
364 |
aaga |
367 |
Q |
| |
|
|||| |
|
|
| T |
35600693 |
aaga |
35600696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 264 - 367
Target Start/End: Original strand, 40656395 - 40656498
Alignment:
| Q |
264 |
caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggtg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40656395 |
caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggcg |
40656494 |
T |
|
| Q |
364 |
aaga |
367 |
Q |
| |
|
|||| |
|
|
| T |
40656495 |
aaga |
40656498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 264 - 360
Target Start/End: Original strand, 9764365 - 9764461
Alignment:
| Q |
264 |
caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagg |
360 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9764365 |
caaggtgttgggcagcatagtagaagccgacaaaatgtgagggctcctccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagg |
9764461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 264 - 367
Target Start/End: Complemental strand, 18334519 - 18334416
Alignment:
| Q |
264 |
caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggtg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18334519 |
caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggcg |
18334420 |
T |
|
| Q |
364 |
aaga |
367 |
Q |
| |
|
|||| |
|
|
| T |
18334419 |
aaga |
18334416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 264 - 367
Target Start/End: Complemental strand, 38702837 - 38702734
Alignment:
| Q |
264 |
caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggtg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
38702837 |
caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagtgtgtgatgatgatgcggatgacccctatgaagtgtatggtgagggcg |
38702738 |
T |
|
| Q |
364 |
aaga |
367 |
Q |
| |
|
|||| |
|
|
| T |
38702737 |
aaga |
38702734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 264 - 367
Target Start/End: Complemental strand, 38965933 - 38965830
Alignment:
| Q |
264 |
caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggtg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38965933 |
caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggcg |
38965834 |
T |
|
| Q |
364 |
aaga |
367 |
Q |
| |
|
|||| |
|
|
| T |
38965833 |
aaga |
38965830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 264 - 367
Target Start/End: Complemental strand, 33887021 - 33886918
Alignment:
| Q |
264 |
caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggtg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
33887021 |
caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagtgtgtgatgatgatgcggatgacccctatgaagtgtatggtgagggcg |
33886922 |
T |
|
| Q |
364 |
aaga |
367 |
Q |
| |
|
|||| |
|
|
| T |
33886921 |
aaga |
33886918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 264 - 367
Target Start/End: Complemental strand, 37567434 - 37567331
Alignment:
| Q |
264 |
caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggtg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
37567434 |
caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagtgtgtgatgatgatgcggatgacccctatgaagtgtatggtgagggcg |
37567335 |
T |
|
| Q |
364 |
aaga |
367 |
Q |
| |
|
|||| |
|
|
| T |
37567334 |
aaga |
37567331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 368
Target Start/End: Complemental strand, 34676594 - 34676490
Alignment:
| Q |
264 |
caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggtg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||||| || |||||| |||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34676594 |
caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagtttgtgctgatgatgcggacgacccctatgaagtgtatggtgagggcg |
34676495 |
T |
|
| Q |
364 |
aagat |
368 |
Q |
| |
|
||||| |
|
|
| T |
34676494 |
aagat |
34676490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 264 - 367
Target Start/End: Original strand, 26249337 - 26249440
Alignment:
| Q |
264 |
caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggtg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||||| || ||||| |||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
26249337 |
caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagggtgtgatgatgatgcggatgacccctatgaagtgtatggtgagggcg |
26249436 |
T |
|
| Q |
364 |
aaga |
367 |
Q |
| |
|
|||| |
|
|
| T |
26249437 |
aaga |
26249440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 264 - 367
Target Start/End: Complemental strand, 33901565 - 33901462
Alignment:
| Q |
264 |
caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggtg |
363 |
Q |
| |
|
||||||| ||||||||| |||||||||||| | | |||||||| || || ||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
33901565 |
caaggtggtgggcagcatagtggaagccgagagagtgtgagggctcctctagtgtgtgatgatgatgcggaagacccctatgaagtgtatggtgagggcg |
33901466 |
T |
|
| Q |
364 |
aaga |
367 |
Q |
| |
|
|||| |
|
|
| T |
33901465 |
aaga |
33901462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 264 - 367
Target Start/End: Original strand, 232 - 335
Alignment:
| Q |
264 |
caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagtgtgtgatgatgatgcggacgacccctatgaagtgtatggtgagggtg |
363 |
Q |
| |
|
|||||| || |||||||||||||||||||| | | |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
232 |
caaggtattaggcagcagagtggaagccgagagagtgtgagggctcctccagtgtgtgatgatgatgcggatgacccctatgaagtgtatggtgagggcg |
331 |
T |
|
| Q |
364 |
aaga |
367 |
Q |
| |
|
|||| |
|
|
| T |
332 |
aaga |
335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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